Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5437 |
Symbol | |
ID | 8016009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012851 |
Strand | - |
Start bp | 40600 |
End bp | 42285 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644827268 |
Product | type IV secretion pathway protein |
Protein accession | YP_002978468 |
Protein GI | 241258202 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.357309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACT GGAATCCTCA AATCAAGCCC CTGGTGGTAG CACTGATCGC CGTAACTGCT CTGCAGGGTT GCGGCATTAC GCAGGTACGT GAGAACCAAG CGGCAATCGT TTCGGACGCA CAGGCCAAGC TTGACGGGGC ACCTCGTAGC CGCCCGGTAG TCCGGATTCA CGATGGATCT TGGCTGATGG GCGAGAAGAT CCGCGCAAGC AAACCGCAGC CGGAGATTTT CAGCAAGCAG GTGGTGTTCA AGGGGTCGCT CGCTAGTCTC ACTGAAGCGG CGGATTGGAT CGCCCAGAAC GTTGGCGTAC GTGCCACCGT CGAAGCTTCG GCCGCCACTA TCCCGCTCCA GATGGCCCGG TCCAGCTCCG GGAACGCGCC CCAACGCATG TCGGATTTGA ACGGCCCCCT GCCATCGAGC TACGGCACTG GTGCGGCGCC ACTCTCACCG ACCGGCGCCG CAATCTCTGC TGGCACGACG GCGAGCGCGG CGGTCGCGCC ACTGGTGTTG AGCTATACCG GCAACCTGCG CGGTTTCCTT GAAACGATTG ACGCACACTG GGGCGTGTGG GATCGCTACC GCGACGGCAC CGTTGCATTT TTCAAGACTG AAACGCGCAC CTTCCCGTTG CCAGACCTGG GCGAAGTCGC CTCAATGAAT GGCTCGATTT CGGCTAACTC AACTGGGGCG GCTGGCTCGG GATCGTCCGG CACGAGCACG GCATCGACGG GCACCGGTTC ATCGAGCGGT TCCGGCAACG GCGGCCAGAC AGCGACGCTC GCTGTGGTAT CTGATCCGTG GCTGAATCTG GAGAAGATCG CCAAGACAAT CGCAGGAGCA GATGCAACAG TGGTGGCCGA CAAGCATCTC GGTTCGGTAA CGGTCACAGC CACGCCGCCG CAATGTGATC GCCTTGAAGA ATGGGTCAAA GGTCTGGACG CCATGTTCGG CAAACAGATC GGCATTGACG TGAAGATCTA TGAAGTCCGG TTGTCGCAGG AAGACAACTA CGGTTTGAAT CTGTCGCTTG CTTACAAGTC CGGCAACGGC CATACCGGCG CGACATTCAC TGGAGCTGGT GTTCCAAGCG TAACGAGCAC GGCATCGCCA ATGACCTTTG GCGCCACCAT CGTCGGCGGC AAGTTGGACG GCACCAAGGC CGCGCTCCAA GCGCTGTCCA CCTTGGGCAA TGTCTCGCGG GTTCTGCAAC GCGGTGGCGT CACACAAAAC GGCAAGGTTC TTGCGCTGCA GGACGCGACG CTGCAGGACT TCGTGCAAGG CACGCAAACA ACGCTAGCCA GCAACGTCGG CTCTACGACG GCTATTCAAA CCTCTACCAA CATCTCCGGC TTCACCGGCA ATTTCCGGCC CAAGGTCATC AATGGCCGAA TCATGATGGT CTTCGATATG ACCATCTCGG AGCTTCAACC GCTGCAAACC TTTACTTCGG GCAGCAGTGC GAGTCAGTCG ACCGTCCAAC TGCGAACGAT GCCTCTGGCG CGCTTCGAGC AGTCGGTGGG GCTCAGGCCT GGCGAAACGC TGGTACTCAC TGGCATGCGC GAGCAATCCA CGAGCACAAC CAACAACGGT ATCGGCTCGC CGTACATGCC GCTGCTGGGC GGTGGCGTCG ATGCGCAGAA GAAGGACACG ATGATCGCTG TCGTCATCAC TGCGCGCCTG CTCTAA
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Protein sequence | MKNWNPQIKP LVVALIAVTA LQGCGITQVR ENQAAIVSDA QAKLDGAPRS RPVVRIHDGS WLMGEKIRAS KPQPEIFSKQ VVFKGSLASL TEAADWIAQN VGVRATVEAS AATIPLQMAR SSSGNAPQRM SDLNGPLPSS YGTGAAPLSP TGAAISAGTT ASAAVAPLVL SYTGNLRGFL ETIDAHWGVW DRYRDGTVAF FKTETRTFPL PDLGEVASMN GSISANSTGA AGSGSSGTST ASTGTGSSSG SGNGGQTATL AVVSDPWLNL EKIAKTIAGA DATVVADKHL GSVTVTATPP QCDRLEEWVK GLDAMFGKQI GIDVKIYEVR LSQEDNYGLN LSLAYKSGNG HTGATFTGAG VPSVTSTASP MTFGATIVGG KLDGTKAALQ ALSTLGNVSR VLQRGGVTQN GKVLALQDAT LQDFVQGTQT TLASNVGSTT AIQTSTNISG FTGNFRPKVI NGRIMMVFDM TISELQPLQT FTSGSSASQS TVQLRTMPLA RFEQSVGLRP GETLVLTGMR EQSTSTTNNG IGSPYMPLLG GGVDAQKKDT MIAVVITARL L
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