Gene Rpic12D_5434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5434 
Symbol 
ID8016006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012851 
Strand
Start bp36925 
End bp38754 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content63% 
IMG OID644827265 
Producttype II secretion system protein E 
Protein accessionYP_002978465 
Protein GI241258199 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGCCT TCCTGAACCG TTTTGTTCGC AAACCGGCGC GGCTCGATCC CGGCGAGGCT 
GGCCGTGGCG GTGCCGTGGC AGCCACGGAC AAGGCCAATT TGGTGCCCGA ACCGCCCGAA
GCGCTGGCAC CCCACGTCGT CTATCCGCGA GTGTTCGGCC CGCGTTTTGA ACAGATCGCA
GTTGATCTGA ACCTGCTCTC TACAGGCCAG GCCCAGGCAC TGCGCCAGCG GGCTGCGGGG
CAGGGTGGGT ATGTCGAATA CCTGGCGCCG ACGTTCGGCC TATCGTCCGA ACAGGTGCAA
CGTGTGCTGG CCGCGCAGGG TTTTGTCGTG CACGTGGATG CACGTCACTA TGGCACCCCG
CGCTTTCTGG CATGGGAAGC CGCGCTACGG CGCCTGGGTG CCACGCCCCA GGTCAGAAAA
GCCTCCGCTC AGGACCTGGC GGCGCTGCGC CGGGAGTTGG CCAATGCCGG GCGGCTGGAC
GATACCGATC TACAGACCCT GGCCAAGGCG CGTCAACTGA TCGCCGATGC TGCCGCAGTC
GGCGCCTCTG ACATTCACAT CCTGGTGCGC GAGGACCACA CCGAGGTCCA GATCCGCATC
AAGGGCGATC TGTGGACAGT CGCCTCGATG TCGATGCGCC GCGAGGAAGG TGAACGCCTG
ACGCGCTCTA TGTATTCGGG CTTGGCCACC ATCAAGGAGG ACAGCTACAA GGCGCTGAAC
TTCCAGAATG CACAGATCAC AGGTGAAGCG TTGCCCGGCA CGGGGCTCAC CTCTGTTCGG
ATTATTCGAG GGCCATCATT TCCGGTGGAG TCCGGTGGCG GCTTCTTGGT TGCACGTCTG
CAATATCGTG ATCTTGCGGC GCAATCCGAG GGCTCCCCAG AAGTTGCGAA GCGCTTGGAT
TTGTGCACGC CCAAAGCGCC ACCGGGCGCT TTCCGCTTGG GAGAGATGGG TTACACGCCG
CTGCAGGTGG AACTCGTCTC ACGGCTGATG CATCGCCCGA TGGGTGCTGT CATCGTGACC
GGCCCTACGG GCTCGGGTAA AACTACCACG CTCTATGAAT ACACGCGGGA ACGGGCGCGC
CTGCTCCCGC ATGACCGCCT GATCACCATC GAGGACCCCA CCGAATACCC GATGAACTGG
GCGATCCAGC TCGTCACCGA CAGCAAAAGC TTTCCGCAGA TGCTGACCAA GACGCTGCGC
ATGGACCCTG ATGTTGTCCT GCTCGGCGAG ATCCGCGACG CGGACGCGGG CGAGGCCACC
CTGCAGGCCG CCGCAACCGG GCACCAGGTG CCCACCACGC TGCACGTGAC TGACCCATTC
GAGACGTTCA CGCGGTTGAT GGGCATGGAC CATGTGCGGC TGTCACTGGA AATCATCTGC
AACCACAACC TGATTATCGG CCTGATCGCG CAGCGCATCG TGCAGATGCT GTGCCCGCAC
TGCAGTGTAC CTCTCGATCA GGCCAGCGAA CAGTTGCCAG CCTACATGCT GCGAGCCTTG
CATACCTGGG GGGACTTGTC CGGCGTGCGC GTGCGCGGCA CGGGTTGCCC GCACTGCGAC
GGCAAAGGCA TCGCTGGTGA GCAAGCAGTG GCCGAGGTGG TGGTGACCAG CGAAGCGCTG
ATGCAGGATT GCATCGAGCA CGGCGTGTTG GTAGCACGTC GTAACCACCG CCGGCGTGCC
GGCTCCGATA AGCCGATGAT TGCCCACGCG ATCGATCTTG TGCTCGCGGG CCGGCTGGAC
CCTCGCGATG CCCAGCGCCG AGTCGATGCC ATTCCGATGC GGGATGAAAT CGATCTGCCG
CCGGACGAAA CGTCGGAGGT GACACCATGA
 
Protein sequence
MFAFLNRFVR KPARLDPGEA GRGGAVAATD KANLVPEPPE ALAPHVVYPR VFGPRFEQIA 
VDLNLLSTGQ AQALRQRAAG QGGYVEYLAP TFGLSSEQVQ RVLAAQGFVV HVDARHYGTP
RFLAWEAALR RLGATPQVRK ASAQDLAALR RELANAGRLD DTDLQTLAKA RQLIADAAAV
GASDIHILVR EDHTEVQIRI KGDLWTVASM SMRREEGERL TRSMYSGLAT IKEDSYKALN
FQNAQITGEA LPGTGLTSVR IIRGPSFPVE SGGGFLVARL QYRDLAAQSE GSPEVAKRLD
LCTPKAPPGA FRLGEMGYTP LQVELVSRLM HRPMGAVIVT GPTGSGKTTT LYEYTRERAR
LLPHDRLITI EDPTEYPMNW AIQLVTDSKS FPQMLTKTLR MDPDVVLLGE IRDADAGEAT
LQAAATGHQV PTTLHVTDPF ETFTRLMGMD HVRLSLEIIC NHNLIIGLIA QRIVQMLCPH
CSVPLDQASE QLPAYMLRAL HTWGDLSGVR VRGTGCPHCD GKGIAGEQAV AEVVVTSEAL
MQDCIEHGVL VARRNHRRRA GSDKPMIAHA IDLVLAGRLD PRDAQRRVDA IPMRDEIDLP
PDETSEVTP