| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5421 |
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| Symbol | |
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| ID | 8015993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012851 |
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| Strand | - |
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| Start bp | 28623 |
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| End bp | 29654 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644827252 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002978452 |
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| Protein GI | 241258186 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGACC AGCAGACACG TGGTTTCGCG TTCGAGGTCC TCCATGACTA CCTGCGTGAT
CTGCAGGAAA TGATGGCAGA CCCGGAAACC AACGAAATCA TGATCAACCG CCACGATGTC
GTGTACCGCG AGCGGCGCGG TGTGATGGAG CGCATCGAAG GGCTGGCGAT CGCGCCTGCC
GCGCTCGATA CCGCCATCAC GGTTCTGACC AATATCAACG ACAAGGATCA GGCGCCGCTG
CTCGATGCGC GCCTGCCAGG CCTGCGCATC GCAGCCGCCC GATTCCCCGT GTCAATCCAC
GGCGACATGA TGTCGATCCG CAAGCACTCC GTGCGGCGCA TCGCCTTGGA TGATTACGTG
CGCAACGGTG CTTTCGCCGT GTTGCCCGCC TCGCAGAACC GCTTCATCGG CCGGCAGGAT
CGGACTGTTC TCGACCACGC CGCTGAAGGC GGCGAGGCGT TGATGCGCTG CCTGCAATGG
ATCATGCGCC AGCGCTACAA CATTGTGTTC TCCGGCGGCA CCTCATCCGG CAAGACCACC
CTGCTCAATG CGTTGCTCGA AGCGATTCCG GAATCCGATC GCATTGTCAC CATCGAGGAC
ACCGCCGAAC TGAAGATCGC TTTGCCCAAC TTCGTGTCGT TCGAAGCGAA CCAGAACATC
ACGATTCGCA ATCTCATTAA GTTCGCACTG CGCATTCGGC CCGACCGCAT CTTTGTGGGC
GAGGTCCGGG GCGCCGAGGC CTTCGACCTG GTGGAAGCAC TGAACACCGG GCATGACGGC
TCGATTTGCA CACTGCACGC CACGAGCGCG GATGAAGCAC CCTACAAGTT GGAGTCGTAC
ATCCGCATGA GCGAGGAAGG CCGCCTGATC GCCACCGAGG ATCTCCGCAA AAAGATCGCC
TCGACCTTCC GCTTCTTCTT GCATGCCGAT CGACAAGGTG ATGGCACGCG CGGGCCTGTT
GAGCTCCGCG AAGTGCTGGG CGTTGAGGAC GGCCGCTACA AGACACGCCT TTTGTTTTCC
CGTTTCGCCT AA
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| Protein sequence | MNDQQTRGFA FEVLHDYLRD LQEMMADPET NEIMINRHDV VYRERRGVME RIEGLAIAPA
ALDTAITVLT NINDKDQAPL LDARLPGLRI AAARFPVSIH GDMMSIRKHS VRRIALDDYV
RNGAFAVLPA SQNRFIGRQD RTVLDHAAEG GEALMRCLQW IMRQRYNIVF SGGTSSGKTT
LLNALLEAIP ESDRIVTIED TAELKIALPN FVSFEANQNI TIRNLIKFAL RIRPDRIFVG
EVRGAEAFDL VEALNTGHDG SICTLHATSA DEAPYKLESY IRMSEEGRLI ATEDLRKKIA
STFRFFLHAD RQGDGTRGPV ELREVLGVED GRYKTRLLFS RFA
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