Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5412 |
Symbol | |
ID | 8015984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012851 |
Strand | - |
Start bp | 19841 |
End bp | 21184 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644827243 |
Product | conjugation TrbI family protein |
Protein accession | YP_002978443 |
Protein GI | 241258177 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.525455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCACGC CTGACCGCAA TGCGGCCCCC ATGACCAATG AGCCTGCCCC GCGCGTTCGT GTGCGACGGG GGCTGGCCAA GACGATCTCC ATTTTCTTCG GTGCCACGAT TCTGTCGATC GTGTTTGTGC GCTATTTCAC GCACCCGCGT GAAACGGCCG ACCAACGGGC ACGGCGCGAA CAGCTCGAAC AACTGGCGAA GGAACAGCCG GCTTCGGGAG ATGCGCTTGC TCAGAAGCTG GAGAATCAAT TCACGCGCGC ACAAACGGAG CATCCGGCAC CCGCGGCGCC GGCGGCGCCG AAGACGCCGC CATCCGGCCC TGTGCCGAAC GGCATGGTAG GCGGCGCATC CGCGCCGGCC GGCGTGCCGG CGGGTGCGCC TGGTTCCCAG GAAGGGCTGA CCCCGGAGCA GCGTCTTGCG CTGCAGCGAG CCTCCCAGGA GACCGACACC ATGGCGGTGG TGTCCTATGG CGATCGCGAG CAAGGCGCTG CAGCCAGTGC CGGCACCAAT CCGATTTCCG ATTACATCGC GTCGCTGCAG CGTCAACAGG CCGACAAACG TACCGCGCCT GGTGAAGCTG GGACACCTGC CATTCAAGCG CAGCTCGCCG CGCTTGCGGC GGCCAACAGC CAGAGCCAGA ACACGCCCGG TTCCGCAACG AACGCGCGTC ACGTCGCGTG GCAGGGACAG CAGACGAACC AAGGCCAGAG CGCAACGTTG ACCCCGCAAG CCGCCGAATC GCCGTTCATG GTTATGCCCG GCACGCCCAT CCCGGTTGTG CTCAACCAAG GCGTCAACAG CGACATGCCC GGGCAGTACA GCGCGACCGT CGACCGGGAC ATCTACGACA GCATCAATGG CTCATGCCGA TTGATCGCAA AAGGCACTCG GATCGTCGGG GCGAGCAATA GCGACGTAGC GATCGGACAG GAGCGTATGC AGATGGGCGC CGCGCTCATG ATCTTCCGTA ACGGCGCATC GATGGTGCTC GATGGGTTGA ACGGAGCCGA TCCGAACGGT GAAGCCGGCG TGTCAGCCGA CGTCAACAAT CACTTCTTCA AGATTTTCGG CTCCACGTTC CTGATTGCCG GCATCGCTCA ATACATCGGC CGCAATCAAA GCCAGCCAAC CGGCACGACG CTCAATATCA ATGGCGGCGG CGGTGCCACC GGCTTGACCT CCGCTGCTGG ACAGGCGGTT TCGCAGACCA CGCAGACGAT CCTGCAGCGC AACTCCAACA TCCAGCCGAC ATTGCGGCTC GATCCTGGCC AGAAGCTTGT TTTCATCACC AAAGCGCCTA TCCGAATTCC ACCTAATACC GTTGCTGGGG AGTGCTACCA ATGA
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Protein sequence | MATPDRNAAP MTNEPAPRVR VRRGLAKTIS IFFGATILSI VFVRYFTHPR ETADQRARRE QLEQLAKEQP ASGDALAQKL ENQFTRAQTE HPAPAAPAAP KTPPSGPVPN GMVGGASAPA GVPAGAPGSQ EGLTPEQRLA LQRASQETDT MAVVSYGDRE QGAAASAGTN PISDYIASLQ RQQADKRTAP GEAGTPAIQA QLAALAAANS QSQNTPGSAT NARHVAWQGQ QTNQGQSATL TPQAAESPFM VMPGTPIPVV LNQGVNSDMP GQYSATVDRD IYDSINGSCR LIAKGTRIVG ASNSDVAIGQ ERMQMGAALM IFRNGASMVL DGLNGADPNG EAGVSADVNN HFFKIFGSTF LIAGIAQYIG RNQSQPTGTT LNINGGGGAT GLTSAAGQAV SQTTQTILQR NSNIQPTLRL DPGQKLVFIT KAPIRIPPNT VAGECYQ
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