| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5394 |
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| Symbol | |
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| ID | 8015966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012851 |
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| Strand | + |
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| Start bp | 7806 |
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| End bp | 9545 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644827226 |
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| Product | Type IV secretory pathway VirB4 protein-like protein |
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| Protein accession | YP_002978426 |
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| Protein GI | 241258160 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.709491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCGGAC ACCTTGGAAT GCACGCATGG GTCGGCAAGG CAATCATGGC CCTGCTGGCG
TGGTCGAGTC CGTGGTATTG GGTCGTGCTC GCCGTGGCGT TGGCCACGGT CGGACTGCTG
CATCCCGTGC CGTGGACATT GAAGGACGAC GAGGACTCAT TCGTCGCTCA TCTTGTGTTG
TGGGTCCGCA AAGCGGCGGC ATACACCGCG CTTTGGGGCA TCTTGGCGAT ACCGTTGTTG
GTGTATTGCA GCTTCGTTCT CTCGGCTGAC ACGTCTTCTG GGCAAGCGTC TAGCGTGTTC
CTGGAGTGGG GCGCTGATCG TCTGGGCCGC TACTGGATGA TGGTCGCGGG AGCGTTCGTG
GTTGGCCTGG CGCTGCGTTT CCTGTGGGAC CGCTACGCTG TTCCAGTGCT TTCAAAGTAT
TGGCGATCGC TTCGCATCGA GCAGGAGACT GACAAGTTGG TCGATGCACG GGAGGAAGTC
GCCACGCTCA AGGCGAAGGA GTTCAAGCCG GAAGATTACT TTGTCGACGG CAAAATCTTC
TACGGCTTGG ACGATGATGG CCAGCCGATT TACTTCGATT TGGACAGGTT CCGCACGACG
CACCACGCCA TCCTCGGCCC GACGAACTAT GGCAAGGGCA TCGTGCTGCA GAGCATCTTC
AAGCAGTGCA TCCGGTTTGG TTTCGGCATT TTTTACGTCG ATCCGAAGGG CGACAACTGG
CTGCCCTACC TGCTGCAGAA CGAAGCGAAG GCGGCCGGCC GCCGCTTCGT CTATCTCGAT
TTGAATCCGG AAGGGCGTGG CGTTTGGCAT CCGTTCCTGG GCGGCGCATT CCGCCAACGA
CGCACGCGCA TCGTGCGCGC GTTCAACCTG GAATCTTTCG GCACGGACGC CGATGTGCAC
AAGGCGAAGG AGCGCGGGCT GCTCGATGAC GCGCTCGAAG GCACTGACGG CACGATCAAA
TCGCTGTTGG AATACGTGAA AAAGAACGCC GAAACAGGGC GCGACAACCT GTCGACCTTG
CGCGATTCCT TGCGTGAATG GTCGCGTGTC GACACGTTCT CACAGTCCGT GAAGCGCAAA
GGCCATTCGA TCGAACAGTG CCTGATGAAC AACGCGATTG TGTATGTGCG TGGTGACCTG
GCCGACCCGG TGATTAAGGC CGCGACCAAG GCATACATAT CGGAGCTGGT GACGGAAATT
AAGCGGCTCG ATGCAACGCG GCCGGCGCAC GTTGTGCTCG GCATTGACGA GCTGAAGTTC
CTGGCCTGCG CGGAAATCAA TGAGGCGCTG GCCACGATCC GACAGCACCA GTGCAACATG
CTGCTGGCCG CGCAGTCGAT TGCGAACCTG GAAGCACCGG ACGACAAGCG GCTCGATGGT
AAGGCGCTGG CACGGGAATT CGAGGTCAAC ACGCCGATCA AGTTCGTTTA CCGCGCTGCT
GACGAGCGCA CTGCCGAGTG GGCGGAAAAC CTGTCGGCGG GGCAATGGCT CAATGTGGTG
CAACGCGAGC AGACGAAGGC GAACAAACAC GGGGGCGAGC AGTGGGAAGC GAATCGGACG
GTTGGCAAGG AGGAACAGCC GGTCGTTTCG CGCAACACGT TGCTGAATCT GCCTGAGCGC
ATCGCCATTG CTTACATGCC AGGCCGGATT GCTTCCAAGC TGTACACCTG CCACACGCAA
ATTGACAACA GTGTCGCATC GTGGAAAAAG CCGGAGGAAG ACACGACGAT GGCGGCATAG
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| Protein sequence | MLGHLGMHAW VGKAIMALLA WSSPWYWVVL AVALATVGLL HPVPWTLKDD EDSFVAHLVL
WVRKAAAYTA LWGILAIPLL VYCSFVLSAD TSSGQASSVF LEWGADRLGR YWMMVAGAFV
VGLALRFLWD RYAVPVLSKY WRSLRIEQET DKLVDAREEV ATLKAKEFKP EDYFVDGKIF
YGLDDDGQPI YFDLDRFRTT HHAILGPTNY GKGIVLQSIF KQCIRFGFGI FYVDPKGDNW
LPYLLQNEAK AAGRRFVYLD LNPEGRGVWH PFLGGAFRQR RTRIVRAFNL ESFGTDADVH
KAKERGLLDD ALEGTDGTIK SLLEYVKKNA ETGRDNLSTL RDSLREWSRV DTFSQSVKRK
GHSIEQCLMN NAIVYVRGDL ADPVIKAATK AYISELVTEI KRLDATRPAH VVLGIDELKF
LACAEINEAL ATIRQHQCNM LLAAQSIANL EAPDDKRLDG KALAREFEVN TPIKFVYRAA
DERTAEWAEN LSAGQWLNVV QREQTKANKH GGEQWEANRT VGKEEQPVVS RNTLLNLPER
IAIAYMPGRI ASKLYTCHTQ IDNSVASWKK PEEDTTMAA
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