Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_4479 |
Symbol | |
ID | 8015242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012850 |
Strand | + |
Start bp | 4610528 |
End bp | 4612003 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644827055 |
Product | type II secretion system protein E |
Protein accession | YP_002978256 |
Protein GI | 241207160 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTTGGAA AACGCGGAAA TGAGGGTTCC GGAAAGGTCG GGGGGGCGAT TGCTCCTCCG CCGCCGGCTC CGGCCGCCGC CCCTGCGGCC TCTTCCCCCT CCATTCTGGT CGAACCCTCG CGCGAGTCCG CACGCCAGCA GGTGACGCCG CCGCCGATGC AGACGCCGCA GCGCAAGCGC CCGGCCCGCA CCGATGAATA TTACGACACC AAGGCGCAGG TCTTTTCCGC GCTGATCGAC ACGATCGATC TCTCGCAACT TTCCAAGCTC GACGGCGAAA GCGCCCGCGA GGAAATCCGC GACATCGTCA ACGACATCAT CACCATCAAG AACTTTGCGA TGTCGATCTC CGAGCAGGAA GAACTGCTCG AGGATATCTG CAACGACGTC CTCGGCTACG GCCCGCTGGA GCCGTTGCTG GCGCGCGACG ACATCGCCGA CATCATGGTC AACGGCGCCG GTCAGACGTT CATCGAAGTC GGCGGCAAGA CGATCGAATC GGAAATACGC TTCCGCGACA ATGCACAGCT TCTCTCGATC TGTCAGCGCA TCGTCAGCCA GGTCGGCCGC CGCGTCGACG AATCGAGCCC GATCTGCGAC GCCCGCCTGC CGGATGGCTC GCGCGTCAAC GTCATCGCGC CGCCGCTGTC GATCGACGGG CCGGCGCTCA CCATCCGCAA GTTCAAGAAG GACAAGCTGA CCCTCGATCA GCTCGTCCGT TTCGGCGCGA TCACGCCGGA AGGTGCAACC GTGCTGCAGA TCATCGGGCG CGTGCGCTGC AATGTCGTCA TTTCAGGCGG CACCGGCTCG GGTAAAACCA CGCTTCTGAA CTGCCTCACC AACTATATCG ACAGGGACGA ACGCGTCATC ACCTGCGAGG ATACGGCCGA ACTGCAACTG CAGCAGCCGC ATGTCGTGCG TCTCGAAACG CGCCCGCCGA ATATCGAAGG CGAGGGCGAG ATCACCATGC GCGATCTCGT CAAGAACTGC CTGCGTATGC GTCCCGAGCG CATCATCGTC GGCGAAGTGC GCGGACCTGA AGTTTTCGAC CTGCTGCAGG CGATGAACAC CGGTCACGAC GGTTCGATGG GCACCATCCA CGCCAACACA CCGCGCGAAT GCCTGAGCCG TATTGAATCG ATGATCGCCA TGGGGGGCTT TACCCTGCCG GCAAAGACGG TGCGCGAGAT CATTTCCAGC TCGGTCGATG TCGTCATTCA GGCGGCACGC CTTCGCGACG GTTCGCGCCG CATCACCCAG ATCACCGAGG TGATCGGCAT GGAAGGCGAC GTCATCATCA CCCAGGACTT GATGCGCTAC GAGATCGATG GCGAGGATGC GAATGGCCGC CTGATCGGCC GGCACATGTC GACCGGCGTC GGCAAGCCGC ATTTCTGGGA TCGCGCCCGC TACTTCAACG AGGAAAAGCG TCTTGCCGCC GCCCTCGACG CGATGGAAGC GAAAACGAAG GAATAG
|
Protein sequence | MFGKRGNEGS GKVGGAIAPP PPAPAAAPAA SSPSILVEPS RESARQQVTP PPMQTPQRKR PARTDEYYDT KAQVFSALID TIDLSQLSKL DGESAREEIR DIVNDIITIK NFAMSISEQE ELLEDICNDV LGYGPLEPLL ARDDIADIMV NGAGQTFIEV GGKTIESEIR FRDNAQLLSI CQRIVSQVGR RVDESSPICD ARLPDGSRVN VIAPPLSIDG PALTIRKFKK DKLTLDQLVR FGAITPEGAT VLQIIGRVRC NVVISGGTGS GKTTLLNCLT NYIDRDERVI TCEDTAELQL QQPHVVRLET RPPNIEGEGE ITMRDLVKNC LRMRPERIIV GEVRGPEVFD LLQAMNTGHD GSMGTIHANT PRECLSRIES MIAMGGFTLP AKTVREIISS SVDVVIQAAR LRDGSRRITQ ITEVIGMEGD VIITQDLMRY EIDGEDANGR LIGRHMSTGV GKPHFWDRAR YFNEEKRLAA ALDAMEAKTK E
|
| |