Gene Rleg_4421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg_4421 
Symbol 
ID8015191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM1325 
KingdomBacteria 
Replicon accessionNC_012850 
Strand
Start bp4550570 
End bp4552909 
Gene Length2340 bp 
Protein Length779 aa 
Translation table11 
GC content62% 
IMG OID644826996 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(s) 
Protein accessionYP_002978198 
Protein GI241207102 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.920702 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTTCGG TCATTACATG TATTCGGGAC AACCACGATT GGCGGCTGGT GCTTGCGGCG 
GCCGCCGTCT GCCTGGTCGG CGCTATGGCG GCTATGCTGC TGCTTTCCCG TGCCCAGGAA
TGCGATGCCG GGCGGCGCAA GCTCTGGATC GGCGCCTCGG CCTTCGCTTT TGGCACCGGC
GTATGGGCAA CGCACTTCAT CGCGATGCTG GCCTATGACG GCGGCATGCC GATCGGCTAC
CAACTGGGCC TGACGACGCT TTCTTTCCTC CTGTCGGTTG TCGGTTCGTG GGCGGCGATC
CTCGTCGCTT CGGAAAGCCG CGGCAGGTTT TCTCGTATCC GCGGCGGGGT CCTGATGGCG
CTCGGCATCG CCTCCATGCA CCTGACCGGC ATGCAGGCGA TCGAAACGCA GGCGGTCATC
CTTTATGATC CCTTCATGAC GCTGAGTGCG GTTCTCGCAG GAGCGCTGTT GTCGAGCGCC
GCCTTCCACA CCTTTTTCCA ATTGAAGGGA CTGCGGCGGC TCCTCGCCTC GTCAATCACT
TTCGTCCTTG CGATCTGCGC GCTCCATTTC ATCTCGATGG CTAGCATCAC GCTCGTGCCG
GATCTCGGGA AAGAGGTTCC GGCAACGGTG CTCGACGCCA GCCTGCTTGC TGCGATCGTC
GTGGTGGCGG CAACGATGCT CATTCTGATT GCGCTCGCCG TGGTCTTTGT CGAAAGCCAC
CTGACGGATC TGAGGGGGCT CGCGAATGCC TCGCAGGAAG GGCTGCTGAT TCTGCGGGAA
GGCCGGATCA TCGATGCCAA TGAACGCTTC CAGGGGCTTT CCGGCTGGAA GCTTGCCGGT
CTTGCCGGTA AGGCGCCCTC GGCTGTTTTG ACCGCTGTTC AGGGGACTGG GCAGAACAGA
TCCAGCGAGA CGCTGCTCAA CACCAGGAAC GGCAGGGAGA TCGCCGTCGA AGTGACCACG
AGCAGGATCG TCTATCGCGG GCATAATTGT GAGGTGCTGG CGGTGCGTGA TCTCACCGAG
CGCAGGCAGG CCGAGGAGAT GATCGAGCAT CTCGCCCACC ACGACGTGCT CACCGATTTG
CCGAACAGGT CGCTGTTCGA TACCCGCATC CGGCAGGCAC TGCAGATGGC CGAACGAAAG
AACAGCGAGG TTGCCCTCTT CTATCTCGAC CTCGATCGCT TCAAGGCCGT CAACGATATC
TTCGGTCATG CTGAAGGCGA CCGCATTCTC CGTAAGGTCG CCTCGATCCT GCGCCGCGTG
GCCGATGAGA GCGATACGAT CGCCCGCCTC GGCGGCGATG AATTCGCCAT CATTCAGCTC
GCCGGGCAGC AGCCGGCGGC GGCGCAAAAG CTTGCGGCTG ATATCCTCGG CGAATTCGCC
GCCGAGATGG ACACGGCACG TGACCCGACC GCCGTCGGCG TCAGTGTCGG CATCGCACTC
TATCCCGCGG ATGGCATGGC TGCTGAAGAA CTCTGCAACA ATGCCGATAC TGCACTCTAC
CGCGTCAAGC ATGACGGTCG CGGCAAGGTC TGTTTCTTCG ACGCGGAAAT GGATAAGGCG
GCACGGAACC GCCGCCAGAT CGAAAGCGAA CTGCGCCATG CGATCGTCCG CAACCAGATC
CATGTCAGCT ATCAGCCGAT CCTCGATGCG CTGAGCGGCG AGATCGGTGG CTACGAGGCC
CTGATGCGCT GGAACCGGCC AGGTCACGGC TTGACCGAGC CCGATATCTT CATCCCGATC
GCCGAGGAAA GCGGCTCGAT CGTCCAACTC GGCGAATGGG TGTTGCAGCA GGCCTGCAGG
GAGGCTGTGC GCTGGCCGCT GCCGTTGATG ATCGCCGTCA ATCTCTCGCC GGTGCAATTC
ATGCTGCCGA ACCTCTGCGA GCGGATCGAG GCGATTCTCG CCGAAACCGG GCTTGCGCCC
AGCCGGCTGG AGCTCGAGAT CACCGAGGCG GCCCTCATTC GCGATCGCGA CCGGGTAATG
ACGACGCTGC TGCGGCTGCA CAAGCTCGGT GTGCACATCG TCATGGATGA TTTCGGCACC
GGTTTTTCCT CGCTTTCCAA CCTGCGTTCA TTCCCTTTCG ACAAGATCAA GGTCGACCGC
AGTTTCACCG GCGTGCTGGA ACATGATGCG GCGGCGCGCT CGATCGTGCG CGCCATCATC
GGCCTTGGTC ATAGCCTCGG CATGCCTGTC GTGACGGAGG GCGTGGAAAC CGAGATGCAG
CGCCGGATCG TCGTCGAGGA AGGCTGCACG CAAGTACAGG GCCTTTTACT CGGCAAGCCG
GATATCGAGC CGAGCATCAA GCTTGCCGCC CACGAAAACG TGCTGACCGC GCAGATCTAA
 
Protein sequence
MFSVITCIRD NHDWRLVLAA AAVCLVGAMA AMLLLSRAQE CDAGRRKLWI GASAFAFGTG 
VWATHFIAML AYDGGMPIGY QLGLTTLSFL LSVVGSWAAI LVASESRGRF SRIRGGVLMA
LGIASMHLTG MQAIETQAVI LYDPFMTLSA VLAGALLSSA AFHTFFQLKG LRRLLASSIT
FVLAICALHF ISMASITLVP DLGKEVPATV LDASLLAAIV VVAATMLILI ALAVVFVESH
LTDLRGLANA SQEGLLILRE GRIIDANERF QGLSGWKLAG LAGKAPSAVL TAVQGTGQNR
SSETLLNTRN GREIAVEVTT SRIVYRGHNC EVLAVRDLTE RRQAEEMIEH LAHHDVLTDL
PNRSLFDTRI RQALQMAERK NSEVALFYLD LDRFKAVNDI FGHAEGDRIL RKVASILRRV
ADESDTIARL GGDEFAIIQL AGQQPAAAQK LAADILGEFA AEMDTARDPT AVGVSVGIAL
YPADGMAAEE LCNNADTALY RVKHDGRGKV CFFDAEMDKA ARNRRQIESE LRHAIVRNQI
HVSYQPILDA LSGEIGGYEA LMRWNRPGHG LTEPDIFIPI AEESGSIVQL GEWVLQQACR
EAVRWPLPLM IAVNLSPVQF MLPNLCERIE AILAETGLAP SRLELEITEA ALIRDRDRVM
TTLLRLHKLG VHIVMDDFGT GFSSLSNLRS FPFDKIKVDR SFTGVLEHDA AARSIVRAII
GLGHSLGMPV VTEGVETEMQ RRIVVEEGCT QVQGLLLGKP DIEPSIKLAA HENVLTAQI