| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3891 |
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| Symbol | xerD |
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| ID | 8014711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012850 |
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| Strand | + |
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| Start bp | 3959246 |
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| End bp | 3960199 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644826461 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_002977673 |
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| Protein GI | 241206577 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.125291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00274094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTGGATC ACGGCCGCGT CCATGTGGAA TCCTTCCTGG AGATGATGAG CGCCGAGCGC
GGCGCTGCCG CCAACACGCT GCAATCCTAT GAGCGCGATC TCGACGACGT CCGCTCCTTC
CTGACCGAGC GCAGCATACG GCTCACAGAA GCCGCCTCCG CCGATCTCGC CGCCTATCTC
TCCTCGCTCG CCCGAGAGGG CTTCAAACCC TCGTCCCAGG CGCGCCGGCT TGCCGCCATG
CGGCAGTTCT ACAAGTTCCT CTATGCCGAG GGCCTGAGGA CCGACGACCC CACAGGCATT
CTCGACGCGC CGAAGAAGGG CCGTCCGCTG CCGAAGACGA TGGGCGTCGA AGAGGTCGGC
AGGCTGCTTT CGCAGGCCGA GGCCGAGGCG GAGGATACGG CTCCGGGCCA GCTGCAGCGC
CTGCGCATGC TGGCGCTGCT GGAGCTGCTC TATGCCACCG GAATGCGGGT CAGCGAACTC
GTCTCGCTTC CCGCCCGCGT GCTCGATCAG GAAGGCCGTT TCCTGATGAT CCGTGGCAAG
GGCAACAAGG AGCGGCTGGT GCCGCTGTCG CATTCGGCAA TATCAGCCCT GAAATCCTAC
GGGCGCCTGC TGGCGGCCGA AAATGCAGCC GTGAAGGAAC GGCAGGAAAG CCCGTGGCTG
TTTCCCTCCG CCTCGAAGGA GGGATACCTG CCGCGCCAGG TTTTTGCCCG CGACCTCAAG
AACCTGGCGA TCCGCGCCGG CCTGACGCCG TCGCTGATCT CGCCGCATGT CATGCGCCAC
GCCTTTGCCA GCCACCTGCT GGCGAACGGC GCCGATCTGC GCGTCGTACA GGAACTCCTC
GGCCATTCGG ACATTTCGAC CACGCAGATC TACACACATG TCCTCGAAGA GAGGCTGCAG
CAGCTTGTCC AGACGCATCA CCCCCTTGCC AAACAGGCGA AAAAGCACGA ATAG
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| Protein sequence | MVDHGRVHVE SFLEMMSAER GAAANTLQSY ERDLDDVRSF LTERSIRLTE AASADLAAYL
SSLAREGFKP SSQARRLAAM RQFYKFLYAE GLRTDDPTGI LDAPKKGRPL PKTMGVEEVG
RLLSQAEAEA EDTAPGQLQR LRMLALLELL YATGMRVSEL VSLPARVLDQ EGRFLMIRGK
GNKERLVPLS HSAISALKSY GRLLAAENAA VKERQESPWL FPSASKEGYL PRQVFARDLK
NLAIRAGLTP SLISPHVMRH AFASHLLANG ADLRVVQELL GHSDISTTQI YTHVLEERLQ
QLVQTHHPLA KQAKKHE
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