Gene Rleg_3484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRleg_3484 
Symbol 
ID8014356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhizobium leguminosarum bv. trifolii WSM1325 
KingdomBacteria 
Replicon accessionNC_012850 
Strand
Start bp3517185 
End bp3519338 
Gene Length2154 bp 
Protein Length717 aa 
Translation table11 
GC content63% 
IMG OID644826049 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002977269 
Protein GI241206173 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.049586 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCTGA TTTTATTCAA CTTTTCCCAG TATATCCCTG TCATCGGCAT CAACCGCACG 
CGAATTTCCA TGGCCCCCTT GCAGAAGACC GAGCAGACCG AAGCACCGAA TGACGACTTC
CGGTCATTGT TTGCAACGCA TCCGTCGCCG ATGTGGGTCT ATGATCCGGT ATCGCTGCGC
TTTCTCATCG TCAACGAAGC GGCGGCAGCA CTTTACGGCT ATGGCGCGGA CGAGTACCGG
CGCATGACGG TTCTGGATAT CCGCCCTGAG CATGAGCGGG AACGGATGAG TGACGCCGTC
AGCGGCCGTA CCGACATGGA AAAGGCGGAA CGCTGGGTTC ACCTCAAGGC AAGCGGCGAG
ACCTTCGAAG TGCTGACCTA TGGCCGAGAA GTGCGTTTCG AGGGCCGGGC CGCAATCCTG
GCGATCGTGC AGGATCGCAG CGAGGTCAAC GCCGCCAGAC GCCAGATGAG CGATACGCGC
TCGCTTCTCG ACAGCATCGT CGACAACCTG CCGGTCGGCG TCTTCGTCAA GGACATGGAA
GCGGACGGGC TTTACGTTCT CTTCAACGAG GCCTGCGGCG ACATCGTCGG CATGAGGGCG
GAACACGTGG TCGGCCGAAC CGATCGGTCG CTGTTTCCCC CCAGTCAGAC AGACGCCTTT
CGCGAGCAGG ACCGCCGGGC CTTCGAAGCC AATGCGGCGA TCAGCTTCGA GGAGACGATG
CAGCGCGCCG ATGGCGTGCC GCGCATCCTG CGCACCGTCA AACGCGCCCT GCCGACGCCG
GAGGGCCATG CGCCGCGTTA TCTGCTCGGC ATCTCGCAGG ACGTGACGGA GGAGCGCGCC
GTCGAGGCAA AGCTTGCCCA TCTCGCCACG CGTGATCCGC TCACCGGCCT GCCGAACCGG
GCGGCATTTT CCGAACATAT CAACCAGCGG GCGGTCGAAG CGACCGCCGA CAGCGCGATC
GCGCTGCTCT ATATCGACGT CGATCACTTC AAGCATATCA ACGACAGCAA GGGACATGCC
GCCGGCGACG CGCTGCTTTG TCAGGTGTCG GAGCGGCTGC TTCAGCTGGC GGGGGAGGGT
GATCTCGTCG CCCGCCTCGG CGGCGACGAA TTCGCCGTCG TACTGGAGCT CGACGAACCG
GAGCGGGCAG GGCGTTTTGC GCAGCGGCTG CTGCAAACTC TTAGCCATGC CTTCGATCTC
GACGGTGCCC GGGAGCATGT CACCTGTAGC GTCGGCATTG CCTTGGCGCC CGACCATGCC
GGCGACGCGG ATGTGCTGAT GCGGCATGCG GATCTGGCGC TCTATGCCGC CAAGGAGAGC
GGACGCTCGA TTTACCGTTT CTACGAGACG GAGATGCGGC TTGCCGCCCA ACGCCGGCAC
GTCATGACCG CCGAGCTGTG GGAAGCGCTG GAGAAGCGCC AGTTCGAGCT GCACTATCAG
CCGATCGTGC AGCTCGACAA TGACGGCATC GGCGGCTTCG AAGCGTTGAT CCGCTGGCGC
CATCCCGAGC GCGGGCTGGT GGCGCCGATG GAATTCATTC CGCTCGCCGA GGAAACCGGC
CTTATCGTGC CGATCGGCGA CTGGGTGATC CGGGAAGCCT GCCGCGCGGC GGGCGGCTGG
CCCGTGCATC TGAGGATCGC CGTCAATCTC TCCGTCAGCC AGTTTCGGCA TGCGAGCCTG
CTTTCGACAG TGGTCGCGGC GCTCGACGAG ACGGGTCTCA CTGCCGACCG CCTTGAAATC
GAAATCACCG AGTCCGTATT CTTGACTGAT GCCGACCAAA GCTTGCCGCG GCTCCGCGCA
TTGAAGGCGC TCGGCGTCCG CATCGCCATC GATGATTTCG GCACCGGTTA TTCGTCGCTG
AGTTATCTCA GGTCCTTCCC CTTCGACAAG ATCAAGCTCG ACCGCAGTTT CGTTTCGGGC
ATCGAGACTG ATGCCGGCAA TCTCGCCATC GTGCGCGCCG TCGTCGGCAT CGGCTCCGGC
TTTAACGCGA CGACGCTGGC CGAAGGGATC GAGACGGAAG AGCAGTTGCA GAAGCTGCGC
GCGGAGGGCT TCAGTGAGGT GCAGGGTTAT CTGCTCGGCC GGCCGATGCC GCAGCACGAG
GCGGAGGCGC TGATCGACGG CCGTGCGCTG AAGGCCGCTT CGTCTCGCAG ATAG
 
Protein sequence
MILILFNFSQ YIPVIGINRT RISMAPLQKT EQTEAPNDDF RSLFATHPSP MWVYDPVSLR 
FLIVNEAAAA LYGYGADEYR RMTVLDIRPE HERERMSDAV SGRTDMEKAE RWVHLKASGE
TFEVLTYGRE VRFEGRAAIL AIVQDRSEVN AARRQMSDTR SLLDSIVDNL PVGVFVKDME
ADGLYVLFNE ACGDIVGMRA EHVVGRTDRS LFPPSQTDAF REQDRRAFEA NAAISFEETM
QRADGVPRIL RTVKRALPTP EGHAPRYLLG ISQDVTEERA VEAKLAHLAT RDPLTGLPNR
AAFSEHINQR AVEATADSAI ALLYIDVDHF KHINDSKGHA AGDALLCQVS ERLLQLAGEG
DLVARLGGDE FAVVLELDEP ERAGRFAQRL LQTLSHAFDL DGAREHVTCS VGIALAPDHA
GDADVLMRHA DLALYAAKES GRSIYRFYET EMRLAAQRRH VMTAELWEAL EKRQFELHYQ
PIVQLDNDGI GGFEALIRWR HPERGLVAPM EFIPLAEETG LIVPIGDWVI REACRAAGGW
PVHLRIAVNL SVSQFRHASL LSTVVAALDE TGLTADRLEI EITESVFLTD ADQSLPRLRA
LKALGVRIAI DDFGTGYSSL SYLRSFPFDK IKLDRSFVSG IETDAGNLAI VRAVVGIGSG
FNATTLAEGI ETEEQLQKLR AEGFSEVQGY LLGRPMPQHE AEALIDGRAL KAASSRR