Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_3484 |
Symbol | |
ID | 8014356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012850 |
Strand | - |
Start bp | 3517185 |
End bp | 3519338 |
Gene Length | 2154 bp |
Protein Length | 717 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644826049 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002977269 |
Protein GI | 241206173 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.049586 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCTGA TTTTATTCAA CTTTTCCCAG TATATCCCTG TCATCGGCAT CAACCGCACG CGAATTTCCA TGGCCCCCTT GCAGAAGACC GAGCAGACCG AAGCACCGAA TGACGACTTC CGGTCATTGT TTGCAACGCA TCCGTCGCCG ATGTGGGTCT ATGATCCGGT ATCGCTGCGC TTTCTCATCG TCAACGAAGC GGCGGCAGCA CTTTACGGCT ATGGCGCGGA CGAGTACCGG CGCATGACGG TTCTGGATAT CCGCCCTGAG CATGAGCGGG AACGGATGAG TGACGCCGTC AGCGGCCGTA CCGACATGGA AAAGGCGGAA CGCTGGGTTC ACCTCAAGGC AAGCGGCGAG ACCTTCGAAG TGCTGACCTA TGGCCGAGAA GTGCGTTTCG AGGGCCGGGC CGCAATCCTG GCGATCGTGC AGGATCGCAG CGAGGTCAAC GCCGCCAGAC GCCAGATGAG CGATACGCGC TCGCTTCTCG ACAGCATCGT CGACAACCTG CCGGTCGGCG TCTTCGTCAA GGACATGGAA GCGGACGGGC TTTACGTTCT CTTCAACGAG GCCTGCGGCG ACATCGTCGG CATGAGGGCG GAACACGTGG TCGGCCGAAC CGATCGGTCG CTGTTTCCCC CCAGTCAGAC AGACGCCTTT CGCGAGCAGG ACCGCCGGGC CTTCGAAGCC AATGCGGCGA TCAGCTTCGA GGAGACGATG CAGCGCGCCG ATGGCGTGCC GCGCATCCTG CGCACCGTCA AACGCGCCCT GCCGACGCCG GAGGGCCATG CGCCGCGTTA TCTGCTCGGC ATCTCGCAGG ACGTGACGGA GGAGCGCGCC GTCGAGGCAA AGCTTGCCCA TCTCGCCACG CGTGATCCGC TCACCGGCCT GCCGAACCGG GCGGCATTTT CCGAACATAT CAACCAGCGG GCGGTCGAAG CGACCGCCGA CAGCGCGATC GCGCTGCTCT ATATCGACGT CGATCACTTC AAGCATATCA ACGACAGCAA GGGACATGCC GCCGGCGACG CGCTGCTTTG TCAGGTGTCG GAGCGGCTGC TTCAGCTGGC GGGGGAGGGT GATCTCGTCG CCCGCCTCGG CGGCGACGAA TTCGCCGTCG TACTGGAGCT CGACGAACCG GAGCGGGCAG GGCGTTTTGC GCAGCGGCTG CTGCAAACTC TTAGCCATGC CTTCGATCTC GACGGTGCCC GGGAGCATGT CACCTGTAGC GTCGGCATTG CCTTGGCGCC CGACCATGCC GGCGACGCGG ATGTGCTGAT GCGGCATGCG GATCTGGCGC TCTATGCCGC CAAGGAGAGC GGACGCTCGA TTTACCGTTT CTACGAGACG GAGATGCGGC TTGCCGCCCA ACGCCGGCAC GTCATGACCG CCGAGCTGTG GGAAGCGCTG GAGAAGCGCC AGTTCGAGCT GCACTATCAG CCGATCGTGC AGCTCGACAA TGACGGCATC GGCGGCTTCG AAGCGTTGAT CCGCTGGCGC CATCCCGAGC GCGGGCTGGT GGCGCCGATG GAATTCATTC CGCTCGCCGA GGAAACCGGC CTTATCGTGC CGATCGGCGA CTGGGTGATC CGGGAAGCCT GCCGCGCGGC GGGCGGCTGG CCCGTGCATC TGAGGATCGC CGTCAATCTC TCCGTCAGCC AGTTTCGGCA TGCGAGCCTG CTTTCGACAG TGGTCGCGGC GCTCGACGAG ACGGGTCTCA CTGCCGACCG CCTTGAAATC GAAATCACCG AGTCCGTATT CTTGACTGAT GCCGACCAAA GCTTGCCGCG GCTCCGCGCA TTGAAGGCGC TCGGCGTCCG CATCGCCATC GATGATTTCG GCACCGGTTA TTCGTCGCTG AGTTATCTCA GGTCCTTCCC CTTCGACAAG ATCAAGCTCG ACCGCAGTTT CGTTTCGGGC ATCGAGACTG ATGCCGGCAA TCTCGCCATC GTGCGCGCCG TCGTCGGCAT CGGCTCCGGC TTTAACGCGA CGACGCTGGC CGAAGGGATC GAGACGGAAG AGCAGTTGCA GAAGCTGCGC GCGGAGGGCT TCAGTGAGGT GCAGGGTTAT CTGCTCGGCC GGCCGATGCC GCAGCACGAG GCGGAGGCGC TGATCGACGG CCGTGCGCTG AAGGCCGCTT CGTCTCGCAG ATAG
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Protein sequence | MILILFNFSQ YIPVIGINRT RISMAPLQKT EQTEAPNDDF RSLFATHPSP MWVYDPVSLR FLIVNEAAAA LYGYGADEYR RMTVLDIRPE HERERMSDAV SGRTDMEKAE RWVHLKASGE TFEVLTYGRE VRFEGRAAIL AIVQDRSEVN AARRQMSDTR SLLDSIVDNL PVGVFVKDME ADGLYVLFNE ACGDIVGMRA EHVVGRTDRS LFPPSQTDAF REQDRRAFEA NAAISFEETM QRADGVPRIL RTVKRALPTP EGHAPRYLLG ISQDVTEERA VEAKLAHLAT RDPLTGLPNR AAFSEHINQR AVEATADSAI ALLYIDVDHF KHINDSKGHA AGDALLCQVS ERLLQLAGEG DLVARLGGDE FAVVLELDEP ERAGRFAQRL LQTLSHAFDL DGAREHVTCS VGIALAPDHA GDADVLMRHA DLALYAAKES GRSIYRFYET EMRLAAQRRH VMTAELWEAL EKRQFELHYQ PIVQLDNDGI GGFEALIRWR HPERGLVAPM EFIPLAEETG LIVPIGDWVI REACRAAGGW PVHLRIAVNL SVSQFRHASL LSTVVAALDE TGLTADRLEI EITESVFLTD ADQSLPRLRA LKALGVRIAI DDFGTGYSSL SYLRSFPFDK IKLDRSFVSG IETDAGNLAI VRAVVGIGSG FNATTLAEGI ETEEQLQKLR AEGFSEVQGY LLGRPMPQHE AEALIDGRAL KAASSRR
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