| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3164 |
|---|
| Symbol | |
|---|
| ID | 8014063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 3163881 |
|---|
| End bp | 3165623 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644825730 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_002976958 |
|---|
| Protein GI | 241205862 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.536296 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.424534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGG ATCGCATGGT GCGTTCCGGC GATAGTCATT GTGGCGCCCC GAAAGGTTAT
ACCTTGACTA ATTTTGAATC GCTTGGTGTC TCCAAGCCGA TCATCGCTAC TTTGTTCCAG
CTCGGCATCG AAACGCCGAC GCCCATCCAG GAACATTCAA TTCCTCTCCT CCTCGAAGGC
CGCGACCTGA TCGGCCTTGC CCAGACCGGC ACCGGCAAGA CCGCCGCTTT CGGCCTGCCG
CTTATCGAAA AGCTGCTCGC CGATGAACGC CGCCCCGACA ACCGCACGAC GCGCACGCTG
ATCCTTGCGC CGACCCGCGA ACTGGTGAAC CAGATCGCCG AGAGCCTGAA GAAGTTCATC
CGCAAGTCGT CGCTGCGCAT CAATGTCGTC GTCGGCGGCG TCTCGATCAA CAAGCAGCAG
CTTCAGCTTG AAAAGGGCAC AGACATTCTC GTCGCCACGC CCGGCCGCCT GCTCGACCTC
ATCAATCGCC GCGCGATCAC GCTGACTGCC GTTCGCTATC TCGTGCTCGA CGAAGCCGAC
CAGATGCTCG ACCTCGGCTT CGTCCACGAT CTGCGCAAGA TCGCCAAGAT GGTGCCGAAA
AAGCGTCAGA CCATGCTGTT CTCGGCGACC ATGCCGAAGG CGATCGCCGA TCTTGCCGGC
GAATATCTCG TCGATCCCGT CAAGGTCGAA GTCACGCCTC CAGGTAAGGC TGCCGACAAG
GTCGAGCAGT ACGTTCATTT CGTCGCCGGC AAGAACGACA AGACGGAGCT GCTGCGCAAG
TCGCTGACCG AAAACCCCGA TGGCCGCGCC ATGGTCTTCC TGCGCACCAA GCATGGTGCC
GAGAAGCTGA TGAAGCATCT CGAAAACATC GGCTATTCCG TCGCCTCGAT CCACGGCAAC
AAGAGCCAGG GTCAGCGCGA GCGGGCGCTG AAGGCCTTCC GCGACGGCAG CATCAAGACG
CTGATCGCCA CCGACGTCGC CGCCCGCGGC ATCGACATTC CGGCCGTCAG CCACGTCTAC
AACTACGACC TGCCTGAAGT GCCCGACGCC TATGTGCATC GCATCGGCCG CACGGCGCGT
GCCGGCCGCG ACGGCATCGC CATCGCTTTC TGCGCTCCCG ACGAAGCCAA GCTGCTGCGT
GATATCGAGC GCCTGATGGG CATCGACATC ACTGTCGCAA GCGGCGAAGC GCCGGCAAAC
ATCAGCGGCG GCCCCCGTCG CGCCAACGGC AACGGCAACA ACCGCAATCG CAATGGCGGC
CAGGGTCGCG AAGGTCAGGG TCGTGGCGAA GGCCGTGGCG ACCAGAATCG CTCCGAGCAT
CGCGGCAACC GTCAGGAACG CCGCCCGCGC CGCGAAGGTG AAGGCAGCGA AGTCCGCGCC
GGCGGCGAGG AGCGTCGTCC GCGTCCGGAA CGCCAGACCA GCCGCAACGA GGATTTCCGC
GGTCAGCGCC GCGGTGAAAC GACGCCGGAT CTCGGCCCCG ACAACGATCT GGCCTCGACC
TCCGATTTCC GCGCCTCTGC AAAGCCGCAG CGTCCGGCCC ATCACGGCGC CCATGCCAAT
GGTGAGCCGA GCGGTCATCA CCGCGGCAAC AGCCGCCATG CCCACGGCCG CCCGGCCCGC
AAGCACGGCG AGGACCGCGG CCCGCAGCAG GCCCAGGCCG GCGAACCACG CCGCGACGGC
AACGGCGGCA ACCACCGCGG TGGCTCCCGC AACGGCGGCG GCCAGCGCCG CGAACGCGCC
TGA
|
|---|
| Protein sequence | MKPDRMVRSG DSHCGAPKGY TLTNFESLGV SKPIIATLFQ LGIETPTPIQ EHSIPLLLEG
RDLIGLAQTG TGKTAAFGLP LIEKLLADER RPDNRTTRTL ILAPTRELVN QIAESLKKFI
RKSSLRINVV VGGVSINKQQ LQLEKGTDIL VATPGRLLDL INRRAITLTA VRYLVLDEAD
QMLDLGFVHD LRKIAKMVPK KRQTMLFSAT MPKAIADLAG EYLVDPVKVE VTPPGKAADK
VEQYVHFVAG KNDKTELLRK SLTENPDGRA MVFLRTKHGA EKLMKHLENI GYSVASIHGN
KSQGQRERAL KAFRDGSIKT LIATDVAARG IDIPAVSHVY NYDLPEVPDA YVHRIGRTAR
AGRDGIAIAF CAPDEAKLLR DIERLMGIDI TVASGEAPAN ISGGPRRANG NGNNRNRNGG
QGREGQGRGE GRGDQNRSEH RGNRQERRPR REGEGSEVRA GGEERRPRPE RQTSRNEDFR
GQRRGETTPD LGPDNDLAST SDFRASAKPQ RPAHHGAHAN GEPSGHHRGN SRHAHGRPAR
KHGEDRGPQQ AQAGEPRRDG NGGNHRGGSR NGGGQRRERA
|
|---|
| |