| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3079 |
|---|
| Symbol | |
|---|
| ID | 8013989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 3076546 |
|---|
| End bp | 3078795 |
|---|
| Gene Length | 2250 bp |
|---|
| Protein Length | 749 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644825647 |
|---|
| Product | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor |
|---|
| Protein accession | YP_002976875 |
|---|
| Protein GI | 241205779 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.578184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.640721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTCC GGCATTGGCG CTCGGTTCTA TTGGTCTGCA CGGCAGCCAC AGTTGTTCTT
CCTGTTTCGC AGTCTTTCGC GCAAAGCGCT CCGGCAACAG CGCCGCAAGC CGCGACGGAG
GAAAGCACCG TCCTGCAGAA GATCGTCGTC AAGGGCAAAC GCGTGGCGCC GGGCAGCGTC
GCCGACACGC CGCTGGCCAC CGAGATCACT GCCAAGCAGC TCGAAGAAAA GCAGGTCACC
AATTTTGACG ATATCGGCCG CAGCGTCGAT GCAGGCGTAA ATTATTCGCG TGGTGACGCA
GGCTTCAACC TGCGTGGCCT TTCGGGCGCT CGCATCCTGA CCACCGTCGA CGGCATTCCA
ATTCCCTATA TTTCGAACAG CTCGCGCCAG GGCGCTTTCG CCCTCAGCAA TGCCAATGGC
GGTGGCGATA CGTTCGATTT CGATTCGCTG TCCTCGCTCG ATATCGTGCG CGGCGCGGAT
TCGAGCAAGG GTGGTTCCGG CATGCTCGGC GGCGCCATCG TTCTCAATAC GCTGGAGCCG
GAGGATCTCA TTCCTGAAGG CCGCGACTGG GGTGCGATCG TCAAGTCGAC CTATGACAGC
GAAGACCGCA GCATTTCCGG CTCAGCCGCT GCCGCCAAGA AGATCGGCGG TACGTCGATC
CTGTTTCAGG GTGGCTACCG CAAGGGGCAT GAACGCGACA ACATGGGCGA CAATGACAGC
TATGGTCGTT TCCGCACCGA GGCGGATCCA GCTGATTTCG ATCAGCATAA TCTGCTCTTC
AAGCTGCGTC AGGAGCTGGA GGGTGGCCAC CGCATCGGTC TGACTGCCGA GCGTTTCAGG
CGTGACCTGC AGACTGATCT GCGTGAACAG CAAGGTACCG GACGCACTTA TATGATCGAC
AATTACGACG GTCGCGAACT GCGTGATCGT GATCGTGTGT CGCTCGATTA TGACTATGAA
GCGCAGTCTT CCGATGCGTT CTTCAGCAGT GCGCGCGCCA CGCTCTATTG GCAGGACTTG
AAGAAGGAAT CCGGCAGCAA GGGGCGTACC GCGGCGAATG TGGCCTATGG CCGTAACAAC
GAGATTGAAA ACGAAACCTG GGGCTTCAGC GGCACTGCAA CGAAGGATTT TGAGTATTCC
GGTCTCAGCC ACTCCGTTCG CATTGGCCTC GACGTCGGCG TTTCCAGCTG GAGCCAGTAT
AGCTGGGCCC TTTGCCCCAC ACCGACGACC TGCCCGTCGC TGAACAATCA GGCGGAAGTG
CCCAATGTCG ACAGCCAGAA TCTTGGGCTT GTTGTCGAAG ACAAGATCGA AATCGGCAAT
ACCGGCTTCG CGCTGACACC CGGCTTCCGC TTTGACTGGT TCAACTACAA TCCCTCGACC
GGCGGGAGTT TCGCAAGCAA TACCGGCCTT GCTCGTTTCG GGGACCTGAG CGACCGAACG
GAAGCCGGCC TGTCACCGAA GATTCTTGCG ACATACGACT TGACGCCCGA CGTGCAGCTC
TACCTGCAGC TGGCAGTCGG CTTCCGCGCA CCCACCGTGG ACGAACTCTA CAGCCGCTTC
TACAACCCGA CGGGCCGCTA CGCCCAGCTC GGCAATCCCG ATCTGCAACC CGAAATCGGC
CGCGGCGTCG AAATCGGCGC TAATTTTGAC ACGGGCGATT TTACCGGTCG GGTTGCGGCC
TTCCACACCC GCTACCAGAA TTTTATCGAG ACGGTGACGA GCGTCGACGC GACCGGCTTT
ACGGCATTCA ACTACACGAA CGTATCTGCG GCAACGATCT CGGGTATTGA AGCCAGCGCC
GCCAAGACAT TCAACAACGG CATCAATCTC CATACGTCAC TTGCCTATGC CTATGGCAGG
AACGAGGAAA CTGCCCAGCG CCTGCGATCG GTGGCACCGT TCAAGGCGAT AGTCGGCGGC
GGCTGGAGCA ACGAGACTTT CGGCTTCGAT CTTTCTTCGA CGCTTTCGGC GGGCATGCTT
ACCGATCATC TCGATACGCC CGTCACCAAC ACCACCGACA CGACCTTCGA TGCGCCGGGC
TACGCGATCG TCGACCTGAC CGGCTGGTGG ACGCCGGACC AGGTGCCGGG CCTGCGCGTG
CAGGCAGGTG TCTACAACAT CTTCGACCAG GAATATTTCA ACGCGCTCGC CGTGCGCGAT
GTCAACCTGA TCTCGACGGC GTCGCAGCCG CGCGATTGGT ATTCCGAGCC CGGACGCACC
TTCAAGATCT CGCTGACCAA GACTTTCTGA
|
|---|
| Protein sequence | MIVRHWRSVL LVCTAATVVL PVSQSFAQSA PATAPQAATE ESTVLQKIVV KGKRVAPGSV
ADTPLATEIT AKQLEEKQVT NFDDIGRSVD AGVNYSRGDA GFNLRGLSGA RILTTVDGIP
IPYISNSSRQ GAFALSNANG GGDTFDFDSL SSLDIVRGAD SSKGGSGMLG GAIVLNTLEP
EDLIPEGRDW GAIVKSTYDS EDRSISGSAA AAKKIGGTSI LFQGGYRKGH ERDNMGDNDS
YGRFRTEADP ADFDQHNLLF KLRQELEGGH RIGLTAERFR RDLQTDLREQ QGTGRTYMID
NYDGRELRDR DRVSLDYDYE AQSSDAFFSS ARATLYWQDL KKESGSKGRT AANVAYGRNN
EIENETWGFS GTATKDFEYS GLSHSVRIGL DVGVSSWSQY SWALCPTPTT CPSLNNQAEV
PNVDSQNLGL VVEDKIEIGN TGFALTPGFR FDWFNYNPST GGSFASNTGL ARFGDLSDRT
EAGLSPKILA TYDLTPDVQL YLQLAVGFRA PTVDELYSRF YNPTGRYAQL GNPDLQPEIG
RGVEIGANFD TGDFTGRVAA FHTRYQNFIE TVTSVDATGF TAFNYTNVSA ATISGIEASA
AKTFNNGINL HTSLAYAYGR NEETAQRLRS VAPFKAIVGG GWSNETFGFD LSSTLSAGML
TDHLDTPVTN TTDTTFDAPG YAIVDLTGWW TPDQVPGLRV QAGVYNIFDQ EYFNALAVRD
VNLISTASQP RDWYSEPGRT FKISLTKTF
|
|---|
| |