| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3030 |
|---|
| Symbol | |
|---|
| ID | 8013945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 3026496 |
|---|
| End bp | 3028847 |
|---|
| Gene Length | 2352 bp |
|---|
| Protein Length | 783 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644825598 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002976826 |
|---|
| Protein GI | 241205730 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATT CCGTTGAGAA CAGATTTTTT GCGATAGTTT GCGGAGCGCT GCTCGTCTTT
GTCGCTCCCC TCTTTGTTCT CTTCCTATTT CTTTCCTCGG AACGGGCCGA CAAGGAAATA
CGCGACCATA TCTCCGTTCT TCTTGTCGCC AATGCCCAGG CGCTGGCCAA ACCGCTGTGG
GATCTCGATG AGGAGAGCGT CACTCAGATC AGCGCGACGG TCGTTTCCCA GGGCGCCATC
GTCAAGGTCG AAGTGCGTGA CCAGTCAGGC CAGCTCGACG TCAGCCAGTC CACCATTCCG
CGCTCCTTCG ACGGCAAGCT GGTGCAGGTG TCGCGCGCCA TCATCTACAA CACCGTCGAC
GGTCCGAAGA ACCTCGGCAG CATCAGCGTC TATTATCCTG CGCTCGGCCT GTTTTCCGGC
CTGAAGCAGG AAGAGGTTGT CTTCATCTCG ATCTTCATCT TCGCGGTGCT GACCGTTTTC
GGCACGGCGC TGATCGGCAA CCGCTTCTTC GTCATCCAGC CGTTGATGCG GCTGACGGCG
GCGATCGAGG CCACCCGCCA GCTGGGCTCC CGCCACCATG TCGACTGGCA GTCGAACGAC
GAGATGGGGC GGCTTGCCCA TAGCTTCAAC GAGATGCAGA CCAAGCTCGA AAGCGAGGAA
AAGGAGCTGA AGCTTGCCCA CCGCCGCGCC ACCGACATCT ACAATCTGAC GCCCGCCATG
CTCTTCTCGC TCGACGAGGA AGACCGCATC ACCGCCGTCA GCGATTATTG GCTGCTTGCC
ACGGGTTACA ACCGCGCCGC CATCATCGGC CGCAACTTCG CCGATCTCGT CACTCCCCCG
ACCCGCGACA AATTCGTCAA GCGCCGCCAG GGCGAAAGCG GCATGACCGT CACCGTCAAG
TTCATCTGCC TGGATGGCCG CACCATGGAC GTCCTTATTA TGGAATCGGA GGCGGGCGCT
GGCGCTCAAG ACCGCCTCTC GCTATCGGTC ATGGCCGATG TGACCGAACT CAAGGCCTCC
GAGGACCGCA ACCACCGCCA GGCAATCACC GATCACCTGA CCGGTCTTCT CAATCGCCAG
GGCTTCGAAG CCGTACTCGA CAACAAGATC GCCGCCGCCG ACGCTGCCGG CCACGAACTC
GCCTGCCTCT TCGTCGATCT CGACCGCTTC AAGTGGATCA ACGACAATAT GGGCCACGCC
GCCGGCGACA TGGCGCTGAT CGAGCTCGTC GAGCGCCTGA AGACCCATCT TGCCCCCTCC
GACGAGGCCG CCCGTCTCGG CGGCGACGAA TTTGCCATCC TGCTGCCGGC GAAGGACGCC
GAAAAACGCG CCAAGGTGAT GTGCGAGCAG ATTGCCTCGA TCTTCGAAAC GCCGTTCGCC
CCCGACATGC ATCTGAGCGC TTCCGTCGGC ATCGCCATCT ATCCGCATCA TGCCGCAACC
GCGGCCGAAC TGCTCCAGAA ATCCGACATG GCGATGTATG CCAAGAAACG CGACGGCAAG
AACGGCGCGC AGCTCTTCGA CAATGCCATG CTCGACCGTG CCCGCAGCCG CGCCGAAATC
GAGGCCAATA TCGAAGCCGG CCTCGTCGAC AACTGGTTCG AAGCCTTTCT GCAGCCGATC
GTTACCCTGA ACGGCCGAGG CATTGCCGGT TTCGAGGCGC TGATGCGCCT CAACCATCCG
CAGAAGGGCT TGATGCCGCC GGCCGAGATC ATCAGCGTCG CCGAGGAAAC GGCAAAGATC
GTCCGCGTCG GCAACGTCAT CATGGAAAAG GCGATCGCCA ACCTCGCGGA GATTTCCCGC
ATATCAGGCA TGCAGGATAC CTATCTCGCC ATCAACTTCT CGCCGTTGCA GTTCGAGCCG
GCGCTGCCGG CCCGTCTTGC CGCCATCGTC GGTCGCCACG GCATCCGCCC CGAGCGCATC
GTCGTCGAGA TCACCGAAGC CGTGCTGATG CACGACAACC CGCAGATCCG CATGATCGTC
ACGGAGCTTC GTCGCTTCGG TTGCCGCATC GCGCTTGACG ATTTCGGCAC CGGCTATTCG
TCGCTGAGCT ACCTCAACCG CTTCCCCGTC GACATCATCA AGATCGACCA GTCCTTCACC
CGCGCGATCA ACGACGGCGA CGACGACGTG CGCCAGAAGA GCCGCATGCT GATCGAAGGC
ATCACCACGC TTTCCCACAA GATGAACTGC ACCGTCATTG CCGAGGGCAT CGAGACCGAA
GAGGAATGCC GCACGCTCCA CCAGATGGGG CTTGACTATG GTCAGGGCTA TCTCTTCCAT
CGTCCACAGC ACGCAGCCAC GCTGATCGAG CAACTGATGG CCTTGCAGTC GGCCGTCGCA
CGCGCCTCGT AA
|
|---|
| Protein sequence | MNNSVENRFF AIVCGALLVF VAPLFVLFLF LSSERADKEI RDHISVLLVA NAQALAKPLW
DLDEESVTQI SATVVSQGAI VKVEVRDQSG QLDVSQSTIP RSFDGKLVQV SRAIIYNTVD
GPKNLGSISV YYPALGLFSG LKQEEVVFIS IFIFAVLTVF GTALIGNRFF VIQPLMRLTA
AIEATRQLGS RHHVDWQSND EMGRLAHSFN EMQTKLESEE KELKLAHRRA TDIYNLTPAM
LFSLDEEDRI TAVSDYWLLA TGYNRAAIIG RNFADLVTPP TRDKFVKRRQ GESGMTVTVK
FICLDGRTMD VLIMESEAGA GAQDRLSLSV MADVTELKAS EDRNHRQAIT DHLTGLLNRQ
GFEAVLDNKI AAADAAGHEL ACLFVDLDRF KWINDNMGHA AGDMALIELV ERLKTHLAPS
DEAARLGGDE FAILLPAKDA EKRAKVMCEQ IASIFETPFA PDMHLSASVG IAIYPHHAAT
AAELLQKSDM AMYAKKRDGK NGAQLFDNAM LDRARSRAEI EANIEAGLVD NWFEAFLQPI
VTLNGRGIAG FEALMRLNHP QKGLMPPAEI ISVAEETAKI VRVGNVIMEK AIANLAEISR
ISGMQDTYLA INFSPLQFEP ALPARLAAIV GRHGIRPERI VVEITEAVLM HDNPQIRMIV
TELRRFGCRI ALDDFGTGYS SLSYLNRFPV DIIKIDQSFT RAINDGDDDV RQKSRMLIEG
ITTLSHKMNC TVIAEGIETE EECRTLHQMG LDYGQGYLFH RPQHAATLIE QLMALQSAVA
RAS
|
|---|
| |