| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_3028 |
|---|
| Symbol | |
|---|
| ID | 8013943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 3023321 |
|---|
| End bp | 3025405 |
|---|
| Gene Length | 2085 bp |
|---|
| Protein Length | 694 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644825596 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with MHYT sensor |
|---|
| Protein accession | YP_002976824 |
|---|
| Protein GI | 241205728 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTG TCCTTTCCTG CATCACCGTC GAACACAGCC TTCCGCATCT GATCTTCGCC
ACCGTTATTT GTGTGCTCGG ATCGATGCTG TCGATGCGCC TCTTCACCCG GGTGCGCCGA
TCGCAGGGGT TGCAGAAAAC CAACTGGTTG TTTCTCTCTG GTTTTGTTGG CGGCTCGACC
ATCTGGACGA CGCATTTCAT CGCCATGCTC GGTTACCAGA CGCCGGTGGC GAACGGCTAT
GAGCCGACGT TGACGCTGCT GTCGCTGTTT GCCGCCGTCG CGACGACGAT GACCGGCTTT
ACCATCGCGT CAATCGCGCA GAAGAGCCCG CTTATCGAGG CAGGCGGCGT TATCGTCGGC
CTCGGCATCG CGGTAATGCA CTATGTCGGG ATCGCCGGTT ACGAGATCGA GGGTCGTCTC
GAATGGCAGA CCTCTTATGT CGTCGCCTCG CTGGTCTTCG CCGGCTTGTT CGGCGCAGTC
GCCACCAATC GCGTCTGCCG GCCGATCACG CGTTTCTGCC GCCACGGGGC TGCCCTTTCG
CTGATCCTTG CGATCGTGCT CACGCATTTC ACCGGCATGG CGGGGCTGAC GATCCTGCCG
GATGCCACTG TTGCGGCACC CACCGAGATC ATCTCGGACG GCATCATGAC CGGTCTCGTC
AGCGCCGTCA TGATCATCAT CCTGGTGCTG GGCGCCTCCA CCTATATTAT CGACATGCAG
TCGACGCAGG CAGCCGTCGA GCGTTATCGC CATCTGTCGC TGCATGACCC GCTGACCAAT
CTTGCCAATC GCGCCGCCTT CAACGAGCAT CTGTCGGCGC TGGTCAACAA GCCGAAGGAC
ATGACGGCCA ATATTGCCGT GCTCTCCTTC GACCTCGACC GTTTCAAGGA AATCAACGAC
GTTCACGGCC ACGCCGCCGG CGATGCCGTG CTGCGCGCCG TCGCCGAACG GCTGTCCAAG
ATCATGCTGA ACGGCCAGTT CGTGGCGCGG GTCGGCGGCG ACGAGTTCGT CGCCGTCATG
TGCGATTATT TCGTCCGTTC GGACGCCAAG GGACTGGCAC AACGCATGCT CGACGAGATC
GCCCGGCCGA TCGAATGGAA CGGCCATGCG CTGACCGTCG GCTCCAGTAT CGGTATCTCC
ACCTATCCCG GACAGGCGGA CACTTTGGAC GACCTGCTGT CACAGGCCGA TATCGCCATG
TATCGGGCAA AATCGACAGC GACCAACAGC ATATGCTTCT ACGAGCCCTC GATGGATCAG
GCAGCGCGCG AACGCAACGC GTTGGCGAGC GAGATGCGGG AGGGATTGGC GCGCGGCGAA
TTCGAGCTGT TCTACCAGCA GCAGAATGAC ACGGTGACGC GCGACATCGT TGGCCTGGAA
GTGCTCCTGC GCTGGAGACA TCCTGTGCGC GGCTACATCT CACCCGTCGA ATTCATTCCG
ATCGCGGAGA AGACCGGCTT TATCATTGAG CTTGGTGAAT GGGTGCTGCG GGCCGCTTGC
GCGGAAGCGG CGACATGGAA GAACCCGTTA CGCATCGCCG TCAACGTCGC GCCGCAGCAG
CTCGGCGACA ACCGCCTACC GCAGATCGTG CATCAGATCC TGCTTGAGAC CGGCCTGCCG
GCGGCGCGAC TCGAGATCGA GATCACCGAA TCCGGCATCA TCGCCGATCA TCAACATGCG
CTTCAGGCCA TCCGCCGGCT GAAGGCGCTC GGCGTCAAGG TGGCGATGGA CGATTACGGC
ACCGGTTATT CGTCACTGTC GACACTGCAG AGCTTCCCGT TCGACAAGAT CAAGATCGAC
CGCGCCTTCG TCGACGGCGT CGTCACCAAC AAGCAGTCTG CGGCAATCGT GCGTTCGACG
CTTATTCTTG CAGCAAGCCT CGACATACCG GTGCTTGCTG AAGGCGTCGA AAACGAAGAC
CATATCGACT TCCTGCGACG GGAAGGCTGC CTGCAGGTGC AGGGCTTCCT CTTCGGTAAG
CCGGGACCGC GCTCGGGCAT CGAGGCGATC GTCAACGGCG AGGTGCCGGC CGCACAGCAG
GAAACGGTTC TTGCGCCGGC CGTGAAAAAA TCCGCGGCCG CGTGA
|
|---|
| Protein sequence | MLRVLSCITV EHSLPHLIFA TVICVLGSML SMRLFTRVRR SQGLQKTNWL FLSGFVGGST
IWTTHFIAML GYQTPVANGY EPTLTLLSLF AAVATTMTGF TIASIAQKSP LIEAGGVIVG
LGIAVMHYVG IAGYEIEGRL EWQTSYVVAS LVFAGLFGAV ATNRVCRPIT RFCRHGAALS
LILAIVLTHF TGMAGLTILP DATVAAPTEI ISDGIMTGLV SAVMIIILVL GASTYIIDMQ
STQAAVERYR HLSLHDPLTN LANRAAFNEH LSALVNKPKD MTANIAVLSF DLDRFKEIND
VHGHAAGDAV LRAVAERLSK IMLNGQFVAR VGGDEFVAVM CDYFVRSDAK GLAQRMLDEI
ARPIEWNGHA LTVGSSIGIS TYPGQADTLD DLLSQADIAM YRAKSTATNS ICFYEPSMDQ
AARERNALAS EMREGLARGE FELFYQQQND TVTRDIVGLE VLLRWRHPVR GYISPVEFIP
IAEKTGFIIE LGEWVLRAAC AEAATWKNPL RIAVNVAPQQ LGDNRLPQIV HQILLETGLP
AARLEIEITE SGIIADHQHA LQAIRRLKAL GVKVAMDDYG TGYSSLSTLQ SFPFDKIKID
RAFVDGVVTN KQSAAIVRST LILAASLDIP VLAEGVENED HIDFLRREGC LQVQGFLFGK
PGPRSGIEAI VNGEVPAAQQ ETVLAPAVKK SAAA
|
|---|
| |