| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_2239 |
|---|
| Symbol | |
|---|
| ID | 8013245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | + |
|---|
| Start bp | 2244739 |
|---|
| End bp | 2246346 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644824825 |
|---|
| Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit |
|---|
| Protein accession | YP_002976055 |
|---|
| Protein GI | 241204959 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.747448 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG ATCTCTTTCC CCTCGGCAAG GATGCCACCC CCTATCGCAA GCTCAGCGGC
GACCATGTCT CGGTCGACAC GTTCAAGGGC CAGGAGATCC TGACCGTCGA GCCGGAGGGG
ATCCGCCTGC TGGCCGAAAC CGCCTTTGCC GACATCAACC ACCTGCTGCG TCCCGGCCAT
CTGAAGCAGC TCGCCTCGAT CCTCGACGAT CCCGAAGCGA CCGACAATGA CCGTTTCGTC
GCTTATGACC TGCTGAAGAA CGCCAATATC GCCGCCGGCG GCGTGCTGCC CATGTGCCAG
GATACCGGCA CGGCGATCAT CATGGGCAAG AAAGGCCGCA GGGTCTGGAC CGAGGGAGAG
GATACGGCGG CGCTGGCCCG TGGCGTCATG GATGCCTATG AGAAGAAGAA CCTGCGCTAT
TCGCAGCTCG CGCCGGTCAA AATGTTCGAG GAAAAGAACA CCAGAAACAA TCTGCCGGCC
CAGATCGACA TCTACGAGGA AGGCACCGAT GCCTACGAAT TCCTCTTCGT CGCCAAGGGC
GGCGGCTCGG CCAACAAGAC CTTCCTCTAC CAAGGCACGC CCTCGCTCTT GACCCATGAT
CGGATGATCG ACTTCCTTAA GGAGAAAATC CTGACGTTAG GGACGGCAGC CTGTCCCCCC
TACCATCTGG CGATCGTCAT CGGCGGCACC TCGGCGGAGA TGAACCTAAA AACCGTCAAG
CTCGCCTCCA CCCGCTATCT CGACGAGCTG CCGACCGAAG GGTCCGAGAG CGGCCACGCC
TTCCGCGACA TCGAGATGGA GACGGAAATC CACAAGCTGA CCCAGCAGAT GGGCGTCGGC
GCCCAGTTCG GCGGCAAGTA TTTCTGTCAT GACGTGCGTG TCATCCGTCT GCCCCGCCAC
GGCGCCTCGC TGCCGATCGG CCTCGGCGTC TCCTGTTCCG CAGACCGTCA GGCCAAGGGC
CGCATCACCC GCGACGGCAT CTTCGTCGAA CAGCTCGAAA CCGATCCGTC GAAATACCTG
CCCGAGATCG ACGAGGCGAA ACTGTCGGAA TCGACGGTGC GCATTGATCT CAACCGGCCG
ATGGCAGACG TGCTTGCCGA ACTCTCCAGG CATCCGGTCA AGACGCGCCT GTCGCTGTCG
GGCACCATCA TTGTCGCCCG CGATCTGGCG CACGCCAAGA TCCGCGAGCG GCTGGAAAAG
GGCGAAGGCA TGCCCGACTA CCTGAAGAAC CACCCGGTCT ATTATGCCGG CCCCGCCAAG
ACACCGGTCG GCTACGCCTC CGGCTCCTTC GGACCGACGA CGGCCGGCCG CATGGACAGC
TATGTCGACC AGTTCCAGTC CTTCGGTGGC TCGATGGTGA TGCTCGCCAA GGGCAACCGC
TCGCGCGCCG TGCGCGAAGC CTGCAAGAAG CACGGCGGTT TCTATCTAGG CTCGATCGGC
GGCCCCGCCG CCCGTCTTGC CCAGGACTGC ATTCGCAAGG TCGAAGTCTT CGAATATCCC
GAACTCGGCA TGGAAGCGGT CTGGAAGATC GAAGTCGAAG ACTTCCCCGC CTTCATCGTC
ATCGACGACA AGGGCAATGA TTTCTTCCAG GAGCTGAATT TGGGGTGA
|
|---|
| Protein sequence | MADDLFPLGK DATPYRKLSG DHVSVDTFKG QEILTVEPEG IRLLAETAFA DINHLLRPGH
LKQLASILDD PEATDNDRFV AYDLLKNANI AAGGVLPMCQ DTGTAIIMGK KGRRVWTEGE
DTAALARGVM DAYEKKNLRY SQLAPVKMFE EKNTRNNLPA QIDIYEEGTD AYEFLFVAKG
GGSANKTFLY QGTPSLLTHD RMIDFLKEKI LTLGTAACPP YHLAIVIGGT SAEMNLKTVK
LASTRYLDEL PTEGSESGHA FRDIEMETEI HKLTQQMGVG AQFGGKYFCH DVRVIRLPRH
GASLPIGLGV SCSADRQAKG RITRDGIFVE QLETDPSKYL PEIDEAKLSE STVRIDLNRP
MADVLAELSR HPVKTRLSLS GTIIVARDLA HAKIRERLEK GEGMPDYLKN HPVYYAGPAK
TPVGYASGSF GPTTAGRMDS YVDQFQSFGG SMVMLAKGNR SRAVREACKK HGGFYLGSIG
GPAARLAQDC IRKVEVFEYP ELGMEAVWKI EVEDFPAFIV IDDKGNDFFQ ELNLG
|
|---|
| |