| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_1971 |
|---|
| Symbol | |
|---|
| ID | 8015625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 1970551 |
|---|
| End bp | 1972701 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644824559 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002975791 |
|---|
| Protein GI | 241204695 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0170847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.348628 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCA ACGACGACCG TCATCCCCGC CGAGGAGTGT GCGCATTCCT GACGGTGGTA
TTTTCAACGC TTCTGCTGGC GAGTGCAAAC CCCGCATCGG CGGCTGAGCC GACCAATTCC
TCGGCGCCGA TCCGGGTTAT TATCGAATTG CCGAATGATG ATTCCGGACG AGCGCTGGTT
AATCGGATCG TTCCGGGCAA TCAGGAACCG GCGCAGCCGG TAGCAGTCTC GCAAGAGGCG
GCACCGACGT CGATTGCAAC GTCACTACAG GATTTGCGCC AGAGGTTGCT CACACTCGTC
GGTGCCGTTC CGACCCTTCC CGGGCAGATC CAGTCGGCGA TCCGGGTCTT CCAAACGGAT
GATCGTATCG AACCGGTCGG CCTGATCTTG GCGGTCATAC TCTTCGTCGC AGGCGGGTTC
GTTGCGCAGC GCCTTGCCTG GTGGTCAGGG CGAGGGCTGC TCCATTTCGT GCTGAACGCG
CCTGCCGACA CAGTCCGGCA GCGGATCAGG CTCCACGCCG CCCGGCTTTC AATGGGTCTT
CTGGCGTTGG TCGGTTACCT GATCGGAAGT CTCGGCGCGT TTATCCTCTT TCCATGGCCT
GCCGTGTTTC GCGATATCGC CCTCATCCTG CTATCAGCGG CGCTCATGGT GCGCCTTGGC
GTGCTCGTGG GCCGTATTGT CATCGCACCA GGCGCCCGCC TGCCGCATAT GCGGCTTCTG
ACGTTGGTCA CCTCACTTGC CTGGTTCTGG TACTACTGGC TCCTCGGAAT CGTCGCTGTG
CTGGCGGCTG GCTGGGCCGC TATTGAAGTG ATCGGGACGA TCGGGGCTTC ACCCATCTTG
GTCGACCTCT TTACCGCAGC ATGGCTCGGT GTCGTTTCAA TCGCTCTGAT CGTTATGATC
TGGCTGCGGC ACTTTCGTTC CGACGGGCCG CCGGTGAGCC GGCTGGTCTG TGTCGGCTTC
AGCGCGAGCA TCATAGTATC GTGGCTGTTA TGGGTGTCCG GGCTCCACGG GGCATTCTGG
ACGGTGGTCA TCATTACGCT TCTGCCTCTT ACCGTTGCGG TGGCTCGTGA TATCATTCGG
CGCATTATTC AATCCGGGGA GGGGCAGGCG GTCGAGGATC CGGCCATCGT CGGATGGTCT
GTTGTCATCA TGCAAACGCT GCGGAACGGC CTCATCGTGG TCGCCGCGCT GCTCATTGCC
CGCGCGTGGA ATGTCAATCT CAGTGATCTC GCCGCAGCCG AAACGGTGAC CACGCGTTTG
ATCCGCGCAG GAATCCGCAT CGTTATCGTG CTGCTGGTGA CCGACGTTAT CTGGAAGCTC
GCAAGCACGT TGATCGACAG TCAGATGGCG GTGGCGTCGC GAAGCGTGCA GGCGGGGCAT
CAGGAGGGAC CCGACGCACG CCGGCGTCAG CGGTTGAATA CCCTCCTTCC CATTCTTCGC
AATGTGCTGT TTCTGGCGAT CGGCGCTGTC GGCTTCCTGA TGATCCTGGA TGCCGTTGGC
ATTCAGATCG GACCGCTGCT GGCGGGCGCC GGGGTCGTCG GCATAGCCGT CGGCTTCGGT
GCCCAAACAC TCGTCAAGGA CATCATCTCC GGCGTCTTTT ATCTGTTCGA CGATGCCTTT
CGCATCGGCG AATACATCCA GGCGGCGAAA TATAAGGGGA CGGTCGAAGG TTTCTCGCTG
CGATCGATCC GCTTGCGCCA TCACCGCGGC CCGGTCACCA TCGTTCCCTT CGGCGAACTC
GGCGCGGTGC AAAACCTCAG CCGTGACTGG GTCATCGACA TCATTACGCT CACCCTGAAC
TATGACAGCG ACCTCGAGGA GGTCCGCAAG ACCATCAAGC GCATCGGCGT TGAGCTTCTG
GAGGATGCCG AACTCGGGCC TAACATCATC GAGCCCTTGA AAATGCAAGG GATCGAGCAG
ATGGCCGATT ATGGTGTGCA GATACGGCTG AAGTTTATGA CCAAACCCGG CGAACAGTTC
GGCGTTCGCC GAAAGGCCCT TGCCATGCTC AAGAAGACAT TCGCGGAAAA AGGCATCCAG
TTTGCAACGC CGACCGTTCA TGTTTCCGGC GGTCCCGCCG ATGCAGCGGC AACCGCCGCC
GCCTCGGAGC TGCAAAGACC ATCGAAAGTC ATCTCGACAC TTGAGGAATA G
|
|---|
| Protein sequence | MRINDDRHPR RGVCAFLTVV FSTLLLASAN PASAAEPTNS SAPIRVIIEL PNDDSGRALV
NRIVPGNQEP AQPVAVSQEA APTSIATSLQ DLRQRLLTLV GAVPTLPGQI QSAIRVFQTD
DRIEPVGLIL AVILFVAGGF VAQRLAWWSG RGLLHFVLNA PADTVRQRIR LHAARLSMGL
LALVGYLIGS LGAFILFPWP AVFRDIALIL LSAALMVRLG VLVGRIVIAP GARLPHMRLL
TLVTSLAWFW YYWLLGIVAV LAAGWAAIEV IGTIGASPIL VDLFTAAWLG VVSIALIVMI
WLRHFRSDGP PVSRLVCVGF SASIIVSWLL WVSGLHGAFW TVVIITLLPL TVAVARDIIR
RIIQSGEGQA VEDPAIVGWS VVIMQTLRNG LIVVAALLIA RAWNVNLSDL AAAETVTTRL
IRAGIRIVIV LLVTDVIWKL ASTLIDSQMA VASRSVQAGH QEGPDARRRQ RLNTLLPILR
NVLFLAIGAV GFLMILDAVG IQIGPLLAGA GVVGIAVGFG AQTLVKDIIS GVFYLFDDAF
RIGEYIQAAK YKGTVEGFSL RSIRLRHHRG PVTIVPFGEL GAVQNLSRDW VIDIITLTLN
YDSDLEEVRK TIKRIGVELL EDAELGPNII EPLKMQGIEQ MADYGVQIRL KFMTKPGEQF
GVRRKALAML KKTFAEKGIQ FATPTVHVSG GPADAAATAA ASELQRPSKV ISTLEE
|
|---|
| |