| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_1572 |
|---|
| Symbol | |
|---|
| ID | 8012650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 1558941 |
|---|
| End bp | 1561859 |
|---|
| Gene Length | 2919 bp |
|---|
| Protein Length | 972 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644824158 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_002975400 |
|---|
| Protein GI | 241204304 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.202848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0502334 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCAGAC TCTATCAACG CACGTTCCTT GGCCTTCTCT CGAATCCTTT CGGAAGCACG
GTTCGGGCGG TGGAACTTGA CGGGCATCAA CTGACATTCA CCAAGCGGGG ACGGACGACG
TCAGTATCTC TCGCCAGCGT CACATCTTCC CCAATCCTGC GCAAAAGAGT CTTTGGGACA
ACGCTGGTTA TTCCCGTCAT GGGGGGTGAC GACATCGTCA TGCGTGGCGC CCAACATTCC
CGCGCCGTCG CCTTCTCGAA CGAGGTCGAG ACCGCCTGGA CGGACTACAA CCTCTCGGCT
CTCTCCAGCG AGGCGGATCG GTTCTTCCGA CTGCATTCTG TAATATTCGG TCTGCTCTCT
CCCGACCGCT ACCCCTCGGC CTGCAGTCTT ACATCTGTAC TGGAAGAGGC GAGGTCTCTC
GATGCGAACT TGCTGTCGAG GCTGCAGCCG CAAGCTATCG GAAGGGAAGC GGCCGATATC
GTCGCGTTCG TAAGGAAGTT CGTTGCCGAT CCCCGCACAG CGCGAGAATT GGCAGTCTCA
AAGTTCGTCG AAGCCGAGCT TGAAACTTGG AAGGACTTCT TCGACACCAT CGAAAGCAAG
CCGCTGACGC CAGAACAGCG GCTCTCCGTT GTAGTCGACG AGGATGCGAC GTTGGTCCTT
GCGGGTGCCG GTTCCGGAAA GACGAGCGTG ATAACCGCCA AGGCCTCCTA TCTCGCAAAG
GCCGGCATCC GTCAGCCTGA GGAAATCCTG CTACTAGCGT TTGCGAAGAA CGCCGCCGAG
GAGATGTCGG AGCGCGTCGA GGCGCGATCT GGGGTACCGT TGGTGGCCCG GACTTTCCAC
GCGCTCGCGT ACGACATCAT CGGAGAGGTC GAAGGATCGA AGCCTGCTCT TGCCAATCAC
GCCACCGACG ATGCTGCCTT CATCGACACC ATCAAACAGA TTCTGAAGGA TCTCGTGCGG
ACCGATCCCG AGGTCGCCAA AGCGATCATC AAATGGTTCG CCCACTTCTT GGCAGAGACC
AAGACAGAGT GGGATTTCAA GACCAAGCAC GACTACTACG CGCACATTGA GAAGCAGGAT
CTGCGTACCC TTCAGGGTGA AAAGGTCAAA AGCTACGAAG AGCTGCAGAT CGCGAATTGG
CTATACGAGA ACGGCGTCGA ATACGAATAC GAACCACTTT ACGAATATAA GGTTTCCGGC
GGTGGATTCC GGGATTATTG CCCCGACTTT CGTCTCACTG AGAGTGGCGT CTACCTTGAG
CACTTTGGCG TGAGACGCCA GACGGCGTCC GACGGCGTTG AACGGCTGAT TACGGCGCCC
TTCGTCGATC GCGATAAGTA TCTCGCCGGC ATGGAGTGGA AGCGCGAGAT CCATACGACG
CACGAGACGA CGCTCATCGA GACGTACAGC TACGAGCGGC AGGAAGGACG CCTGCTGACC
GTCTTGGCGG AGAAGCTCGA GAACCATGTG ACTCTCAAGC CCCGCCCGGT CGAAGAGATC
TTCGACCGCG TCGTCGAACT GAAGCAGGTC GACACCTTCT CGCAGTTGCT CGGCACTTTC
CTTCGTAAGT ACAAGAGCGG CGGCTACGCG ATCTCCGGCT GCGCAGCCAA AGCGGAGAGG
TTAAAGCAGG GCGCTCGCGC GGAAGCTTTC CTTTCGGTCT TCGCACCGGT GTTCGAAGAA
TACGAGAAGC GCTTGAAGGG ACGTATCGAT TTCGAAGACA TGATCCTGAG GGCCGCGCAA
TATGTGGAAG CCCGCCAATA TCACAGCCCG TTCCGTCACA TACTGGTCGA CGAGTTCCAA
GACATCTCGC AGAGCCGGGG CAGACTGGTG AAGGCATTGA AAGTTCAACA TCCGGACGTC
CGCATCTTCG CCGTCGGTGA CGACTGGCAG TCGATCTTCC GTTTTGCGGG ATCCGACATC
CATCTGATGC GCAACTTCGG CGACGAGTTC GGTGGAAGCT TCGACGGAGA GACTGGCGTG
CATCGCACTG TCGATCTGGG ACGCACCTTC AGGTCCGTAG ACCAGATTGC GTTCGCAGCA
AGGACCTTCG TCCTCAAGAA CCCAGCGCAG ATCGAGAAGC AGATCGTTCC CGCTGGGACG
GCGACTGAGC CCTCGATCAA GATAGTTGCG GCAGCAGCGG GTGACGATGG GCGGAGGCTC
TTCGAGATCC TTGCCTCGAT TTCAACCGGC TGCGGCGTCG GGGACACGGC CAGCGTACTC
CTGCTAGGGC GCTATAGGTT TCTCGAACCC GACATGCGGG GTATTCAGCG ACGCTTCCCG
CAATTGCGCA TCAGCTTCAA GACGATCCAT TCCTCGAAAG GACTCGAAGC CGACCACGTT
GTTCTTCTGA AGGCCGACAG CGGTCGCATG GGCTTTCCTT CGGAGGCCGT CGACGACGCC
CTGCTCTCCC TCGTCTCGCC CGAAGAGGAG TCTTTCGAGA ATGCTGAGGA GCGGCGGGTG
ATGTACGTCG CGATGACGCG GGCGCGCCGG ACCCTGACCA TCCTTGCCTC AGCTTCGCGT
CCTTCGTCCT TCGTGACCGA ATTGCGAAGC GACCCCGCGT ACGGCGTTGG GGCGGTATCG
TCGGGACCTG AGAAGACGCA AGAGTGCGGA GAGTGCGGTG GACGGTTGCT TGTCGCGCGG
GGTCAAGATG ATCGCATGTG GTTTCGCTGC GAGCATGTGC AGCACTGCGA CAACGTGCTG
CCAGCATGCC AAGCCTGCGG CACCGCCCTG CCCCGACCGA AAGTCGGGTC ACAGGAGGTT
TCATGTGGAT GTGGGGCGAA TGCGCCGAAA TGCCCGCAAT GCAAAGACGG CTGGTTCGTG
GAGCGAAGCG GCCGGTATGG TCCATTCCTG AGTTGCGTCC GTTATCCATC TTGTGACGGG
AAGGCTAGGA GCAACACCGC AAAGCAAAAA GCCGTGTGA
|
|---|
| Protein sequence | MPRLYQRTFL GLLSNPFGST VRAVELDGHQ LTFTKRGRTT SVSLASVTSS PILRKRVFGT
TLVIPVMGGD DIVMRGAQHS RAVAFSNEVE TAWTDYNLSA LSSEADRFFR LHSVIFGLLS
PDRYPSACSL TSVLEEARSL DANLLSRLQP QAIGREAADI VAFVRKFVAD PRTARELAVS
KFVEAELETW KDFFDTIESK PLTPEQRLSV VVDEDATLVL AGAGSGKTSV ITAKASYLAK
AGIRQPEEIL LLAFAKNAAE EMSERVEARS GVPLVARTFH ALAYDIIGEV EGSKPALANH
ATDDAAFIDT IKQILKDLVR TDPEVAKAII KWFAHFLAET KTEWDFKTKH DYYAHIEKQD
LRTLQGEKVK SYEELQIANW LYENGVEYEY EPLYEYKVSG GGFRDYCPDF RLTESGVYLE
HFGVRRQTAS DGVERLITAP FVDRDKYLAG MEWKREIHTT HETTLIETYS YERQEGRLLT
VLAEKLENHV TLKPRPVEEI FDRVVELKQV DTFSQLLGTF LRKYKSGGYA ISGCAAKAER
LKQGARAEAF LSVFAPVFEE YEKRLKGRID FEDMILRAAQ YVEARQYHSP FRHILVDEFQ
DISQSRGRLV KALKVQHPDV RIFAVGDDWQ SIFRFAGSDI HLMRNFGDEF GGSFDGETGV
HRTVDLGRTF RSVDQIAFAA RTFVLKNPAQ IEKQIVPAGT ATEPSIKIVA AAAGDDGRRL
FEILASISTG CGVGDTASVL LLGRYRFLEP DMRGIQRRFP QLRISFKTIH SSKGLEADHV
VLLKADSGRM GFPSEAVDDA LLSLVSPEEE SFENAEERRV MYVAMTRARR TLTILASASR
PSSFVTELRS DPAYGVGAVS SGPEKTQECG ECGGRLLVAR GQDDRMWFRC EHVQHCDNVL
PACQACGTAL PRPKVGSQEV SCGCGANAPK CPQCKDGWFV ERSGRYGPFL SCVRYPSCDG
KARSNTAKQK AV
|
|---|
| |