Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rleg_1219 |
Symbol | |
ID | 8012326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
Kingdom | Bacteria |
Replicon accession | NC_012850 |
Strand | - |
Start bp | 1195992 |
End bp | 1196837 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644823802 |
Product | polysaccharide deacetylase |
Protein accession | YP_002975052 |
Protein GI | 241203956 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000011337 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTATCGTT TTTTCATTCT GTCCTGCATG GCCCTCACGG TCGCCCTCTC CGCCTGCAGC ACCACCAGAC AAGTAGCTCC CGATACCTCG ATCAAGACCT CCTCGGTGAT CGCGCCCGAG GGACGGGCGC TTGCCTATAC CGGCGACGAT GCGGCGCCGC GCCTTGCCGG CCCGCACCAT CTCGCCGGAC GGACGCTGGA GGTCTCCTCG CTCGCCGAGC TCAAGCTGCA GGACAAGGAA GTGATCCTGA GCTTCGACGA TGGCCCGATC CCCGGCCGGA CCGACAAGGT GCTGGCAATC CTCGACCAGT TCGGCGTCAA GGGCGCCTTC ATGATGGTCG GCGAAATGGC CGAGATGCAT CCGGCGCTCG CCCGCAAGGT CGCCCAGGAC GGCAACACGA TCGGCAGTCA CACCTATGAC CACGCCAACC TCGCTTCGCT GAGTTTCGAC GCGGCGATGG CCGAGGTGAT CAAGGGCGAA TTGACGGTGA CCAAGGCGAC CGGAACCGAT GTCTCCTTCT TCCGCTTCCC CTATCTTGCC GAGAGCCACA GGCTGCGTGC TGCGATCGCC ATGCGCGACA TGGTGGTCAT GGATGTCGAC ATCGACAGCA AAGACTATTT CACCACGACG CGGGTCTCCG CGACGCAGCG GACGATGAAC CTCTTACACA AGCGCGGCCG CGGCATCATC CTGATGCACG ACATCCACAA ACGCACGGTG GCGATGCTGC CGAGCCTGCT CTCGAGGCTC GAAGCCGAAG GCTACAAGGT GGTGACGCTG AAATTCAAGA AGACTGAGGT GCCGAACACC GTCGTTGCCT CAGCCGATTT CGTGACGATC CGCTAA
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Protein sequence | MYRFFILSCM ALTVALSACS TTRQVAPDTS IKTSSVIAPE GRALAYTGDD AAPRLAGPHH LAGRTLEVSS LAELKLQDKE VILSFDDGPI PGRTDKVLAI LDQFGVKGAF MMVGEMAEMH PALARKVAQD GNTIGSHTYD HANLASLSFD AAMAEVIKGE LTVTKATGTD VSFFRFPYLA ESHRLRAAIA MRDMVVMDVD IDSKDYFTTT RVSATQRTMN LLHKRGRGII LMHDIHKRTV AMLPSLLSRL EAEGYKVVTL KFKKTEVPNT VVASADFVTI R
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