| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_1088 |
|---|
| Symbol | |
|---|
| ID | 8012213 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012850 |
|---|
| Strand | - |
|---|
| Start bp | 1069503 |
|---|
| End bp | 1070798 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644823671 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002974922 |
|---|
| Protein GI | 241203826 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.745056 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT TTTGGATCAC CGTCAGCGTT ATCGCAATTG CCGCCGTCGG CGTCTGGCAA
TTCGGGAATC TGGTCCCTAA TGCCTCCCGC ATTCCCTACC TCTCGCAGTT CATCAAGCAG
CCGGCCGGCG GTAATGGCGG CGGGCAGCAG GCACAGGCCG ATCAGGGGCA GGATGGTGGG
CAACATCAGG GCGGCGGGCG CAGACGCGGT GGCGGCGGCC CGACCGTCGT TAAAACAGTC
GCAGCCGTGA AAACGACACT GCCGATGGAC GTGACGGCGA CCGGCTGGGC CGATGCCGAT
GACAATACGA CCATTGCCGC ACAGGAACAG GGCCTGATCG TCAGCATCGA TGCGCAGGAC
GGGGCGACCG TCAAAGCCGG CGACCTGATC GCCAAGCTGG ACGATCGGAC GGCCAAGGCG
ACGGTCGACA AGGACAATGC GATGATCGTG CGCGACGCGG CAACCCTTTC GGAAGCCGCG
ACCGCATTGA CGCGTGCGCA GGATCTCTTC AACCAGAAGG CCGGCACCCA GCAGAGCCTC
GACCAGGCAG TCGCCGCCCG CGATACCGCT GCAGCCACTG TTGACGCCGA CAAGGCGTCG
CTGGCCTCCG ATCAGATCTT GCTCGAGCAC ACCGATATCC GCGCTCCCTT CGACGGCCGG
CTCGGCGATA TCGTTGTCAG CAAGGGGGCT TTCCTCAGTG CCGGGGCGGC AATCGTCACC
ATCGCGAAAT ACGATCCGAT CTATGTGAAA TTCCACCTGC AGGAACGCTA TCTGCGGGAG
CTGAAGAGTG CCTTGGCAGC CGGTCCGGTC GAGGTCAGCA CCGCCCCCAA TTCCACCAAG
GGGCAAGTGC GAAAGGGCGA AATCAGCTTC TACGACAACA CGGTCGATAC GGCCTCGGGC
ACGATCCTCG CCAAGGCGAA ATTCGAGAAT GCCTCCGGTG CGCTCTGGCC CGGCCAGTCA
GTCAACATCG TCGTGCATTT CAACAATGAC GAACAGCAGG TGGTGGTGCC GACGGTTGCC
GTCAGCCCCG GTCCGGAGGG ATTCTTCGCC TTCGTCGCCA AGGACGGCAA ATCGCATCTG
ACGGCCGTCA CCGTTGCCCG TGCAAATGGC GGCTTCACCG CCATAGAATC GGGCCTTCAG
GCAGGCGATC ACGTCGTCGT CGAGGGCCAG GGCCAGCTCA GCGACCAGCA GGCGATCAAC
GAGCAATTCG ACGAAAAGGC GCTTGATGTC GCCTCCGCCG AAGAGCCTCG GCAACAGCAG
CCGTCCGAGA CGATCGCGGT GGGAGCTCAG CAATGA
|
|---|
| Protein sequence | MKKFWITVSV IAIAAVGVWQ FGNLVPNASR IPYLSQFIKQ PAGGNGGGQQ AQADQGQDGG
QHQGGGRRRG GGGPTVVKTV AAVKTTLPMD VTATGWADAD DNTTIAAQEQ GLIVSIDAQD
GATVKAGDLI AKLDDRTAKA TVDKDNAMIV RDAATLSEAA TALTRAQDLF NQKAGTQQSL
DQAVAARDTA AATVDADKAS LASDQILLEH TDIRAPFDGR LGDIVVSKGA FLSAGAAIVT
IAKYDPIYVK FHLQERYLRE LKSALAAGPV EVSTAPNSTK GQVRKGEISF YDNTVDTASG
TILAKAKFEN ASGALWPGQS VNIVVHFNND EQQVVVPTVA VSPGPEGFFA FVAKDGKSHL
TAVTVARANG GFTAIESGLQ AGDHVVVEGQ GQLSDQQAIN EQFDEKALDV ASAEEPRQQQ
PSETIAVGAQ Q
|
|---|
| |