Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5302 |
Symbol | |
ID | 8007799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012849 |
Strand | + |
Start bp | 191245 |
End bp | 191949 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644822512 |
Product | ABC transporter related |
Protein accession | YP_002973772 |
Protein GI | 241114297 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.155471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGCTG CAGCCGATAC AGTCGTCAAG CTCGTAGGTG TCTCCAGGCT GTATCGGCAA GGTGCCAGCG TCGTGCATGC GCTGCAGCAT ATCAATCTGG AAATCCGCAA AGGCGACTTT GCGGTGCTGG TAGGGCCGTC CGGCTCGGGC AAGACAACGC TCCTGAACGT GATCGGTGGC TTGGACTCAC CCACCGAAGG CCATGTCTGG GTCGACGGCA GCGAGATCGG GACACTGGGT AAAGCCGCGC TTTCGGACAT CCGCTTGCGC AAGATCGGCT TCGTCTTCCA GGAGTTCAAT CTGATTCCCG TTCTTTCCGC GCTAGAAAAC GTGGAATTCG TGATGCTGTT GCAGGGGGTG CCAGAGATGC AGCGCCGGGA CCGCGCCATG ACGCTGCTCA AGGAACTGGG ATTGGAAGGG ATGGAGCACA GGCGTCCGCA GCAACTCTCC GGTGGGCAGC AGCAGCGCGT GGCGGTGGCG CGCGCCATCG CGGCCGAGCC GATCATCGTG CTGCCCGATG AGCCGACCGC CAATCTGGAT TCCAAAGCCG GCGCCGCGCT CATGGACATG ATGAAGGCCA TGAATGAACG GCGCGGCGTG ACGTTCGTGT TCTCCACCCA CGACCCGATG GTGGTCGAAC GCGCGCGGCG GGTCATTCGC CTGCGTGACG GCCGGATCGA AGCCGATGAG CGCCGACCGC CATGA
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Protein sequence | MNAAADTVVK LVGVSRLYRQ GASVVHALQH INLEIRKGDF AVLVGPSGSG KTTLLNVIGG LDSPTEGHVW VDGSEIGTLG KAALSDIRLR KIGFVFQEFN LIPVLSALEN VEFVMLLQGV PEMQRRDRAM TLLKELGLEG MEHRRPQQLS GGQQQRVAVA RAIAAEPIIV LPDEPTANLD SKAGAALMDM MKAMNERRGV TFVFSTHDPM VVERARRVIR LRDGRIEADE RRPP
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