Gene Rpic12D_5301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5301 
Symbol 
ID8007798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012849 
Strand
Start bp190475 
End bp191248 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content62% 
IMG OID644822511 
Producthypothetical protein 
Protein accessionYP_002973771 
Protein GI241114296 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2834] Outer membrane lipoprotein-sorting protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.457246 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCGCA AGGCCATTCC CTCTCTGGTG TCCGCGTGCC TTGTGGCGTT TGCTGCCGCA 
TGCATGGTGG GTGGGGCTTG GGCTGAGGAA CCAGACGGCC GCACGCTCGT CGATCGCGTC
GATACCCTGC TGTGGGGCAA GACGCTGCAA GGCGAGTTCC AGATGACGAT CACCACACCG
CGCTGGCAGC GCGCGCTTGA CCTGCGCGCC TGGATGGAGC GGCCGCGGCG CTCGTTCATC
CGCGTTCTGG CGCCGGCCAA GGAGGCCGGT ATTGGGTCGC TGCGTATCGG CTCGGAGATG
TGGAACTACC TGCCCAACAT CGAGCGCACC ATCAAGATTC CGCCGTCGAT GATGCTGCAG
CCCTGGATGG GCTCCGACTT CACCAACGAC GACTTGGTCA AGCAAAGCAG CGCCGTGGAT
GACTACACGC ATCGGGTTCT CCGCACGGAG GTGCTGAACG GCGCCGCGTC TTACGTGATT
GAATCGATTC CCAAGCCGGA TGCCGCCGTC GTGTGGGGAA AGATTCTCTA CTGGATTCGG
CAAGCGGATA CGATTCCGCT CAAGCAGTAT TACTACAACG AGCGCAACGA ACTGGTGCGG
GTCCTGACGT TCTCCGACGT TGGCCCGATG GGTGGCCGCA CCATTCCGAC CAAATGGGAA
ATGCGCCCCG TGAATGATCC AGGCCACGCA ACCGTGATCG TCGTCAAGGC CGCGCGCTAC
GACCAGCCGA TTGACGACGA ACGCTTTACG CAGCGCAATC TGCAAAAGCC ATGA
 
Protein sequence
MVRKAIPSLV SACLVAFAAA CMVGGAWAEE PDGRTLVDRV DTLLWGKTLQ GEFQMTITTP 
RWQRALDLRA WMERPRRSFI RVLAPAKEAG IGSLRIGSEM WNYLPNIERT IKIPPSMMLQ
PWMGSDFTND DLVKQSSAVD DYTHRVLRTE VLNGAASYVI ESIPKPDAAV VWGKILYWIR
QADTIPLKQY YYNERNELVR VLTFSDVGPM GGRTIPTKWE MRPVNDPGHA TVIVVKAARY
DQPIDDERFT QRNLQKP