| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5288 |
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| Symbol | |
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| ID | 8007785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | - |
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| Start bp | 178060 |
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| End bp | 179610 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644822498 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002973758 |
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| Protein GI | 241114283 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAA CCATCTTTGC GCGCATTGCA GCCAGTCTGG TGTTGGCGAG CCTTGGCATG
GGCGCCACCT ACTACCTTGG CGTGAGGCAG GGACAGCGGA GCGCGCCCAC GCAGGCGGCA
GCATCTGCCC AAGCCGCCGA TGCCCCGCTC AAAGCGGGCG ACATCGATCC CAAGACGGGC
AAGCGGATTC TCTATTGGCA AGACCCCATG GCACCTGGCC AGCGTTTCGA CAAACCAGGC
AAATCACCTT TCATGGACAT GCCGCTTGCC CCCGTCTACG AGAATGGCGC CGGCGGGAGC
GCCGCCGTCA CGGTTGATGG CCGTGTGGCA CAGAATCTTG CTGTGCGCAC GGCTGAGGTC
AAGACCGGCC GGCTGGACGC CATGCTGGAA GTGCCCGGCA ATATCGCCAT CAACGAGCGC
GGCATCGAGA TCATTCAAGC GCGCGCCGCC GGCTTTGTCG AACGGGCGTA CGCGAAAACC
ACGTTAGACC CGGTCAAGCG CGGGCAACCG CTGATCGTCG TCTACGCGCC GGAATGGGTC
GCCGCACAAG AGGAGTACCT GGCCGTTTCG CGTACGGCCA ACGCCCTGCA GGGGGACCTG
CGCAGCGCAG CGTTGCTGCG CATGCGCCAG GCCGGCATGA CGGAGGCGCA GATCCGGCTG
GTCGAATCCA CCGGCAAGCC ACAGCCACGG CTGGCGATTT CCAGCGACAT CGATGGCGTC
ATCACCGAGG TCGGGGTCCG GGACGGCATG GCTGTCGCAC CCGGCATGAC GCTCTTCAAG
ATTGCCGACT TGTCCACCGT GTGGGTCTTG GCGGAGATTC CCGAGAGCCA AGCATCGGCC
ATCCGCCCGG GCCAGGCGGT GACGGCCACG GCGACGGCAA TCGCTGGACA CGCGCTGACC
GGCAAGGTGG ATGCCATCCT GCCCGACGTC AATGCCAATA CGCGAACCGT CAAGGTGCGC
GTCGAACTCC AGAACCGGGA CCGCCGCCTC TTGCCCGGCA TGTTCGCCAA CGTGCGGTTT
GGCGCGCAAG CCGGCCCGGA CAAGCTGCTG GTCCCCACGG AGGCGTTGAT TCGCACCGGT
ACGCGCACGA TCGTCATGGT GGACGCCGGC AATGGCGGCT TCAACCCCAT CGAAGTCAAG
ACCGGAGCCG AAGCCAATGG GCAGACCGAA GTGACCGACG GTTTGAGCGC GGGACAGAAG
GTGGTGGTTT CCGGGCAGTT CCTGATTGAT TCGGAAGCTA GCCTGCGCGG CACCGCCCAA
CGCATGGCAT CGCCACCTGC GGCCTCCGCG CCCGCAGCGG CCGCCATCGA GCATGAAGGC
GTCGGCCGCA TTGAGGCTGT CACCAGCGAA GGCCTGACGA TCTCACATGG CGCGATTCCG
TCCGCGCACT GGAGCGCGAT GACAATGGAT TTTGCCGCAC CGCCCTCCGG CCTGCCAAAG
CGCTTCAAGC CTGGGGACCG TGTGCGCTTC CGGTTCCAAC TGCATGACGA TGGCATGGCA
GTCCTGTCCT CGGTCGAGCC GGCCGGCGCG GATCAGGGGG GCAAGCCATG A
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| Protein sequence | MNRTIFARIA ASLVLASLGM GATYYLGVRQ GQRSAPTQAA ASAQAADAPL KAGDIDPKTG
KRILYWQDPM APGQRFDKPG KSPFMDMPLA PVYENGAGGS AAVTVDGRVA QNLAVRTAEV
KTGRLDAMLE VPGNIAINER GIEIIQARAA GFVERAYAKT TLDPVKRGQP LIVVYAPEWV
AAQEEYLAVS RTANALQGDL RSAALLRMRQ AGMTEAQIRL VESTGKPQPR LAISSDIDGV
ITEVGVRDGM AVAPGMTLFK IADLSTVWVL AEIPESQASA IRPGQAVTAT ATAIAGHALT
GKVDAILPDV NANTRTVKVR VELQNRDRRL LPGMFANVRF GAQAGPDKLL VPTEALIRTG
TRTIVMVDAG NGGFNPIEVK TGAEANGQTE VTDGLSAGQK VVVSGQFLID SEASLRGTAQ
RMASPPAASA PAAAAIEHEG VGRIEAVTSE GLTISHGAIP SAHWSAMTMD FAAPPSGLPK
RFKPGDRVRF RFQLHDDGMA VLSSVEPAGA DQGGKP
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