| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5201 |
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| Symbol | |
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| ID | 8007781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | + |
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| Start bp | 98997 |
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| End bp | 100583 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644822412 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_002973672 |
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| Protein GI | 241114197 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.963027 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGCTT TGGTTGAGCG GTTCAGGGCA TTCTCGCGCG TTGACGCGCA TGTCGAGCCA
ATGCGGCTCC CGCCTGTTCC TGCCACGCTG ATGCAACACG TCGTGTGGGC GGGGGTCGGC
GAGAAGATTC AGGTCGATGG CCGCTATGCA GGTGGTTCGG CCTTTCTCAC ATGGTTGGCT
GACCTCAAAC GCCATGGTCT GGAGCCGGTT GTTGAATCTC TTGCCCCGCA GGAGCTGGCG
CAAGCGCGCG AAAGCACGTC GGACGGGCAA TCGGGCGACG CATACCTTGA GTTTCTGGAA
ATGTCGCGCC GGCGGCACGT CGAGGCTGCC GAACTGGGGG CGTCCGACCT TCACGTTCTG
CAGCGAGAAG ACCATGCTGA ATTTCAGTTG CGCATTGACG GCGAGCTATG GACGGTGCCC
GAGTGGGAAC TGAACGCTGC GCAGGGGGAA GCTTTTGTGC GAGCAACTTG CGTCGGCCTC
GCAACCGTCA AAGAGCCGAC ATTCAATCCG CTCGAGTTCC AGGAAGCGCA GATCAGCGGC
AACAAGCTGC CTGAGACCGA TATTGAAAGT GTTCGCATTA CGCGCGGCCC AGCCTATCCG
ATCGAGGCCG GTGGTGGCGT CATGGTTAAT CGCCTGCAAC CGCGCAGGCA CACGGCCACA
CTTCAGCGAC GCGAGACGCC GGCGAGTCGT CTGCGACTGG TGAGACCGGA GGCGCCGGCC
GGCAAAGTCG ACTTTGAGCG GATGGGATTC ACGACGCTGC AGCTCGCGAT GTTCGAGCAG
GTCGTCCTGA TGCCGGATGG TCTGTTTATT CAGACGGGGC CGACGGGAAG TGGCAAGACC
ACGACCGGCT ACGAAATGCT GCGCTACAAG GGGCAGATTT CGCCCGAGCT GCGGCAGATC
ACCCGTGAGC ATCCGGTCGA GTACCCGCGT GAATGGGCAG TGCAACTGCT TTCGACGGGG
CAGAACTCCT CATACCTCGT CGAACGCATG CTCCGGATGG ACCCGGACAT CATCGACATC
GGCGAGATCC GCACAGGCAA TGAAGGTGTT GCAGCAGTTC AGGCAGCGCA GACCGGGCAC
TTGGTCTTCG GCTCGCTCCA CGTTCTTGAT CCGTTCGAAC TGATTGGTCG CCTGCAAATG
CTCGACCACA CGCTGCTTTC CAAGGAGTTG ATGTGCAACC ACAAAATCAT CGCGGGTTTC
ATGGGGCAGC GGATGGTTCC CGTGCTGTGC ACGGAGTGTC GGGAGCCATT GGCCAAACAT
CTCGACGCAA TGCCGGGAAT TCTGCTCGAC CGCATCAAAA CCTGGGGAAA CATCGAACAG
GTCCATGTGC GGGGAAAGGG ATGTCCGCAC TGCTTCGGCC GGCAAATCCG CGGGCGTGAG
GCAGTTGCAG AGGTTGTCCT TAGCACCGAA GAGCTGATGG AAGACTTCCT CAGGGGGACG
TCGTTGGCAC GTCGAAATCA CCGCCTGCGT GAGGGCTCCG ACAAATCCAT GCTCGGCAAT
GTCATGGAAC GTGTGTTGGC CGGCAGGATC GATCCGCGCG ACGCGCAGAA GAACGTGCCC
ATTGAGGCGT ATCGCGAGGG CGTATGA
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| Protein sequence | MVALVERFRA FSRVDAHVEP MRLPPVPATL MQHVVWAGVG EKIQVDGRYA GGSAFLTWLA
DLKRHGLEPV VESLAPQELA QARESTSDGQ SGDAYLEFLE MSRRRHVEAA ELGASDLHVL
QREDHAEFQL RIDGELWTVP EWELNAAQGE AFVRATCVGL ATVKEPTFNP LEFQEAQISG
NKLPETDIES VRITRGPAYP IEAGGGVMVN RLQPRRHTAT LQRRETPASR LRLVRPEAPA
GKVDFERMGF TTLQLAMFEQ VVLMPDGLFI QTGPTGSGKT TTGYEMLRYK GQISPELRQI
TREHPVEYPR EWAVQLLSTG QNSSYLVERM LRMDPDIIDI GEIRTGNEGV AAVQAAQTGH
LVFGSLHVLD PFELIGRLQM LDHTLLSKEL MCNHKIIAGF MGQRMVPVLC TECREPLAKH
LDAMPGILLD RIKTWGNIEQ VHVRGKGCPH CFGRQIRGRE AVAEVVLSTE ELMEDFLRGT
SLARRNHRLR EGSDKSMLGN VMERVLAGRI DPRDAQKNVP IEAYREGV
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