Gene Rpic12D_5189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_5189 
Symbol 
ID8007769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012849 
Strand
Start bp87031 
End bp87900 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content63% 
IMG OID644822400 
ProductIntegrase catalytic region 
Protein accessionYP_002973660 
Protein GI241114185 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.100014 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAAGC TGTATCCGGT GAGTGTGTCC TGCGGTGTGC TGGAGGTGAG CGCGAGCGGG 
TACTTCAACT GGCTGCGCCG AGGCGAGTCT GGCCACGGTG GCCCTGGCCG GCGCTACAGC
GACGAAGCCT TGCTGGCGCA CATTCGTGCC ATCCACGCCC AGGTCAAGGG CGAATACGGC
TGGCCACGCA TGCACAAGGA ACTGCTGGCC CGAGGCATCC GTGTGGGCAA AGACCGGGTT
CGCAAGCTCA TGCAGCAGCA CGCCATCAAG GCCAGGACGA AACGCAAGTT TGTGGTCACC
ACCGACAGCA GACACAGCCT GCCGGTGGCG CCCGACCTGG TGCAGCGGCG CTTCAAGCCC
GAGGAGCCCA ACCAGCTCTG GAGTGGCGAC ATCACCTACA TCCAGACCGA CGAGGGCTGG
CTGTACCTGG CTGCGGTCAT CGACCTGTTC AGCCGTCAGG TGGTGGGCTG GAGCCTGCAG
CCGCACATGC AGGCGGGCTT GGTCAAGGAC GCGCTGGCCA TGGCGTGGTG GCGCCGTAGA
CCGCCTCCTG GGGTGATATT CCACAGCGAC CGGGGCAGCC AGTATTGCAG CGCAGAGTTC
CAGCAGGCCC TGAAGAACTG GGGCATCCAA TCATCGATGA GCCGCAAGGG GAACTGTTGG
GACAACGCAC CGACGGAAAG CTTCTGGGGG CGGCTGAAAA CCGCCAGCGT GCATGGGTGC
AAATTCGCCA CCCGTGAGCA GGCAAGTCAG GCGGTGATGG ACTGGATGGC CTTCTACAAT
CACCGAAGGT TGCATTCGTC ACTGGGCTAC CTCAGCCCGA TGCAATACGA GCAGCGCTGG
TACGAGGCAC AGCGTAAAAA GGCCGCGTGA
 
Protein sequence
MRKLYPVSVS CGVLEVSASG YFNWLRRGES GHGGPGRRYS DEALLAHIRA IHAQVKGEYG 
WPRMHKELLA RGIRVGKDRV RKLMQQHAIK ARTKRKFVVT TDSRHSLPVA PDLVQRRFKP
EEPNQLWSGD ITYIQTDEGW LYLAAVIDLF SRQVVGWSLQ PHMQAGLVKD ALAMAWWRRR
PPPGVIFHSD RGSQYCSAEF QQALKNWGIQ SSMSRKGNCW DNAPTESFWG RLKTASVHGC
KFATREQASQ AVMDWMAFYN HRRLHSSLGY LSPMQYEQRW YEAQRKKAA