| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5137 |
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| Symbol | |
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| ID | 8007717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | + |
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| Start bp | 35323 |
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| End bp | 38562 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644822351 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_002973611 |
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| Protein GI | 241114136 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.858708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.481716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAAG CTCTTCTCCA GGGCGTGGTT CGAGCCCGTT GGATGGTGCT GTTTCTGACG
GCGCTCGTCG CCGCCTTCGG CGCCTGGCAG CTCAACTTGC TGCCCATCGA CGTCACGCCC
GACATCACGA ACAAGCAGGT ACAGATCAAC ACGGTTGTCC CGACACTGAC ACCGGTCGAG
GTTGAAAAAC GAGTGACCTA TCCGATCGAG ACAGCGCTTG CCGGCCTGAA CGGCGTGGAG
AACATGCGCT CGTTCTCGCG CAATGGCTTC AGCCAGGTCA CGGTGATCTT CAAGGAGAGC
GCCAACCTGT ACTTCATGCG CCAGCAGGTC ACCGAACGCT TGAATCAGGC GCGGGCCAGC
CTGCCCGAAG GTGCCGACCC CGTCCTCGGA CCGGTATCCA CTGGCCTCGG CGAGGTGGTG
CACTACAGCG TCGAGTACAA GTACCCGCGC GGCGAGGGTG CGCCTGCACC GGCTGAAGGC
AAGGCCGGCT GGCAGAAGGA CGGCAGCTTC GTGACGGACG AGGGCGAACG CTTGCCCGAT
TCCGTCTCGC AGTTGGCCTA CCTCCGCACG GTGCAGGACT GGATCGTCCG GCCACAGCTG
CGCATGACGC CCGGCGTCGC TGACGTGGAC TCGCTGGGCG GCTTCGTCAA GCAGTACGTC
GTCGAGCCCG ACCTGACGCG TCTTGCGGCC TACGGCCTGG ACTGGAGTGA ACTCGGTCGC
GCGCTGGAAG ACTCGAATCT ATCCATCGGT GCCAACTACT TGCGTCGCTC AGGCGAGAAC
TACCTCGTCC GTGCCGATGG CCGACTGCGC TCCGTGGACC AGATCGCCAA TACGGTTGTC
GCGCAACGCA ACGGCGTGCC GGTCACGGTG GGCCAGGTGG CCACGGTCAA GATCGGCGGT
GAGATTCGCA CCGGTGCAGC CAGCCGCGAC GGCAATGAGG CGGTCGTCGG CAGCGCGCTG
ATGCTTGTCG GCGAAAACAG CCGGACGGTT GCCGCCGCCG TGGTCGAGAA GCTGGGAGAG
ATCAAGAAGA CGCTGCCGGA AGGCGTCGTG CTGGAGCCCA CGCTGGACCG CTCCCAGCTG
GTGGTGGCCA CCATCAAGAC CGTCGCCAAG AACCTGACCG AGGGTGCGCT GCTGGTTGTC
GCCATCCTGT TCGCCCTGCT GGGCAACTGG CGCGCGGCCG TCATCGCGGC GCTGGTGATT
CCGCTGTCGC TGCTGATGAG CGCCATCGGC ATGAACTCCT TCGGCATCTC GGGCAACCTG
ATGAGCCTCG GTGCGCTGGA CTTCGGTCTG ATCATCGACG GCGCCGTCAT CGTGGTCGAG
AACGCCTTGC GGCGCCTGGC CCATCGACAG GCACTGGAAG GCCGCTTGCT GACGCTCGGC
GAGCGCCTGC AGGAGGTCAT GGCTTCGTCC AAGGAAATGA TCAAGCCGAC CGTATACGGC
CAGCTGGTGA TCTTCCTGGT GTTCCTGCCG TGCCTGAGCT TCCAGGGCGT CGAGGGCAAG
ATGTTCTCGC CCATGGTGAT CACGCTGATG CTGGCCCTCG CGTCCGCCTT CGTGCTGTCC
ACCACCTTCG TGCCGGCCAT GCTGGCCGTC GTGATGACGA AGCACATCGA GGAGCGCGAA
GTCAAGGTGA TCCAGGCGAC CAAGAACCGG TACCTGCCGG TGCTGCAGCG TACGGTGGCC
AACCCGTGGC CATCGATCGT CACCGGCCTC GTCATAGTGG CGGCGGCAGC GGTCACCTTC
CGATTCGTCG GCAAGGAGTT CATGCCCACG CTCGACGAAC AGAACCTGAA CCTCTCGTCA
GTCCGCATTC CTTCGATGTC GATCGAGGAC TCGGCCGCGC TGGACCTGCC CATCGAGCGG
ACCCTGTTGA CCCTCCCTGA GGTCAAGACG GTCTACTCGA AGGCGGGTAC GGCCAGCCTG
GCGGCGGACC CGATGCCTCC GAACGCCTCC GACAACTACG TCATCCTGAA GCCCAAGAAC
GAGTGGCCCG AAGGCGTGAC CACCAAGGAG CAGGTCGTCG AGCGCATCCG CGAGAAGATG
TCGGCGATCG TGGGCAATGC CTACGACGCG ACGCAACCGA TCGAGATGCG GTTCAACGAG
TTGATCGGCG GCGTCCGCAG CGATGTGGCC GTCAAGATCT ACGGCGACGA CCTCGACCAG
TTGGCTGCGA CCGGCCAGCG CATCGCCGCG TTGCTGAAGA AGATCCCGGG CGCGGTCGAT
ACGCGCGTGG CGCAGACATC GGGGTTCCCA ACCTTCGACA TCGAGTTCGA CCGCGTGGCG
ATTGCGCGCC ACGGCCTCAC GCTCAAGGAA GTTGCCGACA CGGTGTCCGC CGCGCTGGCA
GGCCGGCCGT CGGGTCAGAT CTTCGAGGGT GACCGTCGCT TCGACCTGGT CGTGCGCCTG
CCAGGCGATC AACGCAACAA TCTGGACCAG CTGCGCGGAT TGCCGGTGAC GCTGCCCGCG
GTCGACGGCA AGCCGCGTGC TTCGGTGCCG CTGGGTTCGC TGGTGCAGTT CAAGTTCACG
CAAGGTCTGA ACGAGGTCAG TCGTGACAAC GGCAAGCGCC GCCTGTATGT CGAGGCGAAC
GTCAGCGGGC GGGACCTGGG CAGCTTTGTC GCCGAAGCGC AGAAGCGCAT CGACGCCGAG
ATCAAGCTGC CAACCGGCGC GTGGATCGAA TGGGGCGGCC AGTTCCAGAA CCTGCAGGCT
GCTTCCAAGC GGCTGGCCAT CATCATCCCG GCGTGCCTGG TGCTCATCAG TGCGGTCCTC
TACCTGGCCA TCGGCAGCGC TGCGCTGACG GCGACGGTGT TGGCCACCAT CCCGATGGCA
GTGGCGGGCG GCGTGTTCAC GCTGGCTATT CGCGACATTC CGTTCTCGAT CTCCGCTGCT
GTGGGATTCA TCGCCGTGTC AGGTGTGGCG GTGCTCAACG GCCTCGTGAT GATTTCGGCA
ATCCGTAAGC GGCTGGAAGA CGGCATGGCG ACTAGCGCGG CCGTGATCGA AGGCGCGATG
GAGCGCGTGC GACCCGTCCT GATGACCGCT CTGGTCGCGT CCTTGGGCTT CATCCCGATG
GCGTTCGGTA CCGGCACTGG GGCCGAGGTA CAGCGGCCGC TGGCAACGGT CGTGATCGGC
GGCCTGATCA CCGCGACGGT CCTGACGCTG CTGGTCCTGC CCGCGTTGTG CGGTCTCGTC
CTGAAGCGGT CGGATCAGGC CAAGCCTGAG CCGGAACCCG AACCCCTGCC GCAAGCCTGA
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| Protein sequence | MIQALLQGVV RARWMVLFLT ALVAAFGAWQ LNLLPIDVTP DITNKQVQIN TVVPTLTPVE
VEKRVTYPIE TALAGLNGVE NMRSFSRNGF SQVTVIFKES ANLYFMRQQV TERLNQARAS
LPEGADPVLG PVSTGLGEVV HYSVEYKYPR GEGAPAPAEG KAGWQKDGSF VTDEGERLPD
SVSQLAYLRT VQDWIVRPQL RMTPGVADVD SLGGFVKQYV VEPDLTRLAA YGLDWSELGR
ALEDSNLSIG ANYLRRSGEN YLVRADGRLR SVDQIANTVV AQRNGVPVTV GQVATVKIGG
EIRTGAASRD GNEAVVGSAL MLVGENSRTV AAAVVEKLGE IKKTLPEGVV LEPTLDRSQL
VVATIKTVAK NLTEGALLVV AILFALLGNW RAAVIAALVI PLSLLMSAIG MNSFGISGNL
MSLGALDFGL IIDGAVIVVE NALRRLAHRQ ALEGRLLTLG ERLQEVMASS KEMIKPTVYG
QLVIFLVFLP CLSFQGVEGK MFSPMVITLM LALASAFVLS TTFVPAMLAV VMTKHIEERE
VKVIQATKNR YLPVLQRTVA NPWPSIVTGL VIVAAAAVTF RFVGKEFMPT LDEQNLNLSS
VRIPSMSIED SAALDLPIER TLLTLPEVKT VYSKAGTASL AADPMPPNAS DNYVILKPKN
EWPEGVTTKE QVVERIREKM SAIVGNAYDA TQPIEMRFNE LIGGVRSDVA VKIYGDDLDQ
LAATGQRIAA LLKKIPGAVD TRVAQTSGFP TFDIEFDRVA IARHGLTLKE VADTVSAALA
GRPSGQIFEG DRRFDLVVRL PGDQRNNLDQ LRGLPVTLPA VDGKPRASVP LGSLVQFKFT
QGLNEVSRDN GKRRLYVEAN VSGRDLGSFV AEAQKRIDAE IKLPTGAWIE WGGQFQNLQA
ASKRLAIIIP ACLVLISAVL YLAIGSAALT ATVLATIPMA VAGGVFTLAI RDIPFSISAA
VGFIAVSGVA VLNGLVMISA IRKRLEDGMA TSAAVIEGAM ERVRPVLMTA LVASLGFIPM
AFGTGTGAEV QRPLATVVIG GLITATVLTL LVLPALCGLV LKRSDQAKPE PEPEPLPQA
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