| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5136 |
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| Symbol | |
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| ID | 8007716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | + |
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| Start bp | 34133 |
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| End bp | 35326 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644822350 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002973610 |
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| Protein GI | 241114135 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.465852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAGCA AATTCAAGCT GAACCAAGTG CTGATCGCGG CCTGCATCGC CGCCGGTGCA
GGAGCACTGG GCTACGGCAT TGCGAGCCGC AGCTCGAGCG GTGCAGAGCC GGCGCCAGCC
GCCGCCGCAC CGAAGCCGGC AGCGACCGCA AATGCGGCCA AGAAGGACGC GCCCGAGCTG
AAGATCCCGG CGGACTACAT CACCGCCGCC AACATCACTG TCGAGAACGC GTCTGGCTCT
GACGTCCGCA ATGAGCTTCT GCTCCCTGCG GTCGTGACGG CCGCACCGGG CGCGGAAGCC
GCCGTGGTGA GCCGCGCAAA CGGCACATTG GTCCGGGTCT TGCGCCGCCT CGGCGACACC
GTCAAGGCAG GTGAGGTGCT CGCAAGTATC GAGAGCCTCG AAGCCGCCAC CATGGTGAGC
GACCGCCGCG TGGCGCAAGC CAAGGTCGAC CTGGCGCGCA AGACGCTGGC CCGTGAGAAG
AGCCTCTTCG ACCAGGGCGT CACGCCTCGT CAAGCGCTGG AAGCCGCTCA AGCAGATGTG
GACGTCGCTG AGGCTGAGGC TCAGCGGGCC GCTGCTGTCG CAGGCGCCGC GCGCGTCGGC
AGCGACGGCC GATCGCTCAA TATCGTGGCG CCCATCGCCG GCCGCATCAC TTCCATCACT
GCGCTTGCAG GCGCCCACGT GACGCCGGAC CTTGAGCTGT TCCGTGTGGG AATGCCCGGT
GCCGTGCAGA TCGAGGCGCC TCTGACCGCG GACGATCTGC GTCGCGTGGC AGTGGGCGAC
TCGGCTACTG TTCTGACTCG CTCCGGCAAG CCGGTGCCGG TGACGGTTCG CGGCTTGACG
CCAGGCGTCA GCGCCACCAC GCGTGCGGCC ACGGTCGTGC TCATTCCGAC GGCGGGGCCG
GATGCGCAAT CGCTCCTCGC CGGCGAAGGT GTGCAGGTCC GCCTGCAGAC CCGCGGTCAA
TCCACGCCGC AGGGCGTCGC CGTGCCCGAA GAGGCGGTGC AAAACATCGA CGGTACGGAT
GTCGTGTTCC TCCGCACGCC TGAAGGCTTC CGCGTCCAGC AGGTCTACGT GGGTCTGCGC
AGCGGTGGCC TGGCGCAGAT CGTCACTGGC CTGAAGTCGG GCCAGCAGGT CGCCGTCCGC
AATGCCTTCC TGCTGAAGGC CGAGGCGAAG AAGCTCGCGG GAGACGACGA ATGA
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| Protein sequence | MTSKFKLNQV LIAACIAAGA GALGYGIASR SSSGAEPAPA AAAPKPAATA NAAKKDAPEL
KIPADYITAA NITVENASGS DVRNELLLPA VVTAAPGAEA AVVSRANGTL VRVLRRLGDT
VKAGEVLASI ESLEAATMVS DRRVAQAKVD LARKTLAREK SLFDQGVTPR QALEAAQADV
DVAEAEAQRA AAVAGAARVG SDGRSLNIVA PIAGRITSIT ALAGAHVTPD LELFRVGMPG
AVQIEAPLTA DDLRRVAVGD SATVLTRSGK PVPVTVRGLT PGVSATTRAA TVVLIPTAGP
DAQSLLAGEG VQVRLQTRGQ STPQGVAVPE EAVQNIDGTD VVFLRTPEGF RVQQVYVGLR
SGGLAQIVTG LKSGQQVAVR NAFLLKAEAK KLAGDDE
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