| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5135 |
|---|
| Symbol | |
|---|
| ID | 8007715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012849 |
|---|
| Strand | + |
|---|
| Start bp | 32829 |
|---|
| End bp | 34136 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644822349 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_002973609 |
|---|
| Protein GI | 241114134 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0970024 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCGC AATTTCCCCT TCGCGCGCCG GTGCAGAGGC AGCGCGGTGC TGGCCTTGCC
AGCCGCCGCA ATGTCGTCTC GCAACCGAGC CTGGCGCTGT GCGCCCTCGC GCTCGCGCTC
ACCCTTTCAA CAACCACCTC CCAAGCAGCC GACGCGCCGG CCTTCGGCGT GCTGCTGCAA
CAGTCACTGG CGCGGGCGCC CATCCTGCTT GAGCAGCAGG CCAATGCCGA AGCCGCGCGC
CTGGACGCGG CGCAGAGCCG CAAGTGGCTC AATCCCAAGG TCGACGCACT TTCTGAAGAC
CTGAACGCGC CGAGCAACGG CGGTCAGAGC CCGCGTCAAA TCACCTTCTC CATCAGTCAG
CCGCTGGAAC TGGGCGGCAA GCGAGCCTCT CGCATCGCCG TGTCCGACCG CGATTCCGAT
GTGGCCGAAG CCAGGCGCCG TGAAGCCGAA GTGCTGTGGG CTGCAAAGCT CGCCGTCGCC
TACGGAACGG TCGAGGCGGC CCAAGGGCGG CAACGTGTGG CAGCAGATGA ACTGAGCCGC
GCCGGCGACG ACTTGCGGGC CGCGCGCGCC CAAGTCGAAG CAGGCAAGGA AGCCAGTGTC
CGCGTCGCGC AGGCAGAAGC CGGTGCCGCT GCCGCCCGTG GCGCCGAGCG CGCAGCCGCC
GCCGACCTGA CCCAGGCCCT GGAAGAGCTG TCTGCACTCG TTGGGTCCCA GGAGCGCTTC
ACCGGCATCG CCGGATCCCT GTTCAGCACG GCAGCCGACG CAGGCGCCGC AGCCGACGAA
TCTCCCACGC TGCGCGTCGC GCAAAGCGAG CGTGAGGCCT CCGAGGCCCG GCTGCAAGTG
GAAGAGCGGC GCTGGATTCC AGACCTCAGC GTGACGGCCG GCGTGCGTCG CTATGCCAGG
ACGTCCCAGA ACGGCTATGT GGTCGGCTTG TCCGCATCCA TCCCGTTGTT CGACCGCAAT
CGAGACGGCG TCGCCGCCGC GCGCCAGCGC GTGCAGGCCG CCGACGCACG CGTCCTGGCT
GCCCGGCTGG AGACAGCTGC AGCCCGTCGA TCGGCGCAGG CGCAACTGCT GGCTGCGGAG
GGGCAACTGG AAGCTGCTCT TGAGGGCGAG CGTGCGTCCG CCGAAGGCTA TCGACTGGCC
CGCATCGGCT ACGACGCCGG ACGCACGCCT CTTGTCGAGC TGCTGTTCGC TCGTCGCGCT
TATTCCGAAG CTCAACGTTC AACCATCGAC GCGCGATTGG CGCGCGTCCG TTCCCTGGCA
GCGCTCGCGC AGGCGCAGGG CCGTCTCGCA TTTGGAGAAT CACAATGA
|
|---|
| Protein sequence | MSSQFPLRAP VQRQRGAGLA SRRNVVSQPS LALCALALAL TLSTTTSQAA DAPAFGVLLQ
QSLARAPILL EQQANAEAAR LDAAQSRKWL NPKVDALSED LNAPSNGGQS PRQITFSISQ
PLELGGKRAS RIAVSDRDSD VAEARRREAE VLWAAKLAVA YGTVEAAQGR QRVAADELSR
AGDDLRAARA QVEAGKEASV RVAQAEAGAA AARGAERAAA ADLTQALEEL SALVGSQERF
TGIAGSLFST AADAGAAADE SPTLRVAQSE REASEARLQV EERRWIPDLS VTAGVRRYAR
TSQNGYVVGL SASIPLFDRN RDGVAAARQR VQAADARVLA ARLETAAARR SAQAQLLAAE
GQLEAALEGE RASAEGYRLA RIGYDAGRTP LVELLFARRA YSEAQRSTID ARLARVRSLA
ALAQAQGRLA FGESQ
|
|---|
| |