| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5120 |
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| Symbol | |
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| ID | 8007906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012849 |
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| Strand | - |
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| Start bp | 20279 |
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| End bp | 23509 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644822336 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_002973596 |
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| Protein GI | 241114121 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.682933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0269626 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCACA GCATTCTGCA AGGCGCGGTG CGCCTGCGCT GGATGGTCCT GTTCGTGACC
GCCGTGGTGG CCGCGATCGG CGCATGGCAG TTGAATCTGC TGCCGATCGA CGTCACGCCG
GATATCACCA ACAAGCAGGT CCAGATCAAT ACCGTGGTGC CGACATTGAG CCCGGTCGAG
ATCGAGAAGC GCGTCACGTA TCCCATCGAG ACCGCGCTAG CCGGCCTCAA CGGCGTGGAG
AGCACGCGCT CGTTCTCGCG CAATGGCTTC AGCCAGGTAA CGGTGATCTT CAAGGAAAGC
GCGAATCTGT ATTTCATGCG CCAGCAGGTG TCGGAGCGGC TGGCCCAGGC GCGGCCCAAC
CTCCCCGAGG GGGCCGAGCC GCAGATGGGC CCGGTCTCCA CCGGCCTGGG CGAGGTGTTC
CACTACAGCG TCGAATACGC GCACCCCGAC GGCAAAGGCG CGGCGGTCAA GGATGGCCAG
CCCGGCTGGC AAAGCGACGG CAGCTTCCTC ACCGATCGCG GCGAACGCCT GGCCGACCAG
GTTGCCAAGC TTGCCTACCT GCGCACCGTG CAGGACTGGA TCATCCGGCC GCAACTGCGC
ACCACGCCCG GCGTGGCCGA CGTGGATTCG CTCGGCGGGT ATGTAAAGCA ATACGTGGTC
GAGCCCGATG CAGCGAAGCT GGCGGCCTAC GGCATCTCAT ACTCCGATCT GGCTCGCGCG
CTGGAAGACG CCAACCTCTC GGTGGGTGCC AACTTCATCC GGCGCTCGGG CGAGTCCTAT
CTGGTGCGCG CGGACGCACG CATCCGCACC ATCGACGAAA TCGCCCGAGC GGTGGTTGCG
CACCGGCAGA ACGTGCCGGT GACGGTCGGC CAAGTGGCCA CTGTCAACGT GGGCGGCGAA
CTGCGTTCCG GCGCGGCCAG CCGCAACGGC TATGAAACCG TGGTCGGCAG CGCGCTGATG
CTGGTCGGTG CAAACAGCCG CACGGTGGCG CACGCGGTTG GCGAGAAGCT CAACAAGATC
GGCACAACCC TGCCGCCGGG CGTCGTCATC GTGCCGACGC TGGACCGCTC CCAACTGGTG
GTGGCCACCG TCGAGACGGT CGCGCGCAAC CTGACCGAGG GCGCGCTGCT GGTGGTGGCC
ATCCTATTCT GGCTGCTCGG CAACTGGCGT GCCGCGGCCA TTGCCGCGCT GATCATTCCG
CTGTCACTGC TGATGAGCGC GATCGGCATG AACGCCTTGG GCATCTCCGG CAACCTGATG
AGTCTGGGTG CGCTCGATTT CGGGCTCATC ATCGACGGCG CCGTCATCAT CGTCGAGAAC
ACGCTGCGCC GCCTGGCCGA GCGTCAGCAT CGGGAAGGCC GCACGCTGAC GCTGCGCGAG
CGGCTGGACG AAACGGTCGC CTCCTCACGC GAGATGGTCC GCCCGACCGT CTACGGCCAG
ATGGTGATTT TCCTGGTGTT CGTGCCGTGT CTGACGTTCC AGGGCGTCGA AGGCAAGATG
TTCTCGCCGA TGGTGATCAC GCTGATGCTG GCACTCGCGT CGGCCTTCGT GCTGTCGCTG
ACGTTCGTGC CGGCCATGAT CGCGATCCTG CTGCGCTCGC ATGTGGCCGA GCAGGAGGTG
CGCGTCATCG TGGCCGCCAA GCAGCGCTAT CGCCCGTGGC TGCAACGTGC GGTGGCCCGA
CCGCTGCCGT TCATCGGCGC GGGCGTGGCC GTGCTGGTGC TGGCCGTGGC GGCGTTCGGC
CTGGTTGGCC GCGAGTTCAT GCCGACGCTG GATGAGCAGA ACCTGAACCT GTCGTCGGTG
CGGATCCCGT CCACGTCGAT CGACCAGTCG GTGGCGATCG ATCTGCCGCT CGAGCGCGCA
GTGATGAGCC TGCCCGAGGT CAAGACGGTC TACTCCAAGG CCGGCACCGC AAGCTTGGCC
GCCGACCCGA TGCCGCCCAA CGCCTCGGAC AACTACATTA TCCTCAAGCC GAAAGATCAG
TGGCCAGCCG GGGTAACGAC CAAGGAACAG GTTATCGAGC GTATCCGCGA GAAGACCGCA
CCGATGGTGG GCAACAACTA CGACGTCACG CAGCCGATCG AGATGCGCTT CAACGAGCTG
ATCGGCGGTG TGCGCAGCGA TGTGGCCGTC AAGCTCTATG GCGACAATCT GGACGAGCTG
GCTGCCACCG CCCAGCGCGT TGCTGCCGTG CTGCGCAAGA CACCGGGCGC GTCCGACGTG
CGGGTTCCGC AGACAAGCGG CTTTCCGACC TTCGACATCG CCTTCGACCG CGCGGCGATC
GCCCGCTACG GTCTGACCGT CAAGGAGGTG GCCGATACCG TGTCGACCGC ATTGGGCGGC
AAAGCCGCCG GCCAGGTGTT CGACGGCGAC CGCCGTTTCG ATATCGTGGT GCGCCTGCCT
GGCGCGCAGC GGGACAATCT CGATATGCTT GGCGCGCTGC CGGTGATGCT GCCCTCGGCA
GATGGCCAGC CGCGCGGCTC CGTGCCGCTG CGCCAACTGG TGCAATTCCG CTTTACACAG
GGCCTGAATG AGGTCAGCCG CGATAACGGC AAACGTCGGA TCTACGTGGA AGCCAATGTG
GCCGGGCGTG ACCTTGGCAG CTTTGTCGAC GACGCGGCGC AACGCATCGC CCGCGAAGTG
AAGCTGCCGA CCGGTTCGTG GATTGAATGG GGTGGTCAGT TCCAGAACCT CCAGGCCGCC
ACCCAGCGCC TGGCGATCAT CGTGCCGATC TGCTTCATCC TGATTGCCGC AGCGCTCTAT
ATGGCCATCG GCAACGCCAT GCTGACCGCT ACCGTGCTAA CGGCAGTGCC GTTGGCCCTG
GCCGGCGGCG TGTTCGCGCT GGCGCTGCGT GGCATCCCGT TCTCGATTTC GGCGGCGGTC
GGCTTCATTG CCGTGTCCGG CGTGGCGGTT CTCAACGGGC TGGTGTTGAT CTCGGCGATC
CGTAAACGTA TGGCGGATGG GCTAGCACCC GACGCGGCGG TGATCGAAGG CGCCATGGAG
CGCGTACGAC CCGTGCTGAT GACGGCACTG GTGGCGTCGC TCGGCTTCGT GCCCATGGCG
ATCGCTACCG GAACCGGCGC CGAGGTGCAG AAGCCCTTGG CGACGGTCGT GATCGGCGGC
TTGGTGACGG CGACTGTCCT AACCCTGTTT GTGCTGCCGG CCATTTGCGG GATCGTGCTG
CGGCGGCGCG CAGCCGACTC GCCTGGGAGC CCCGAACTCG CCAGGAGTTG A
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| Protein sequence | MIHSILQGAV RLRWMVLFVT AVVAAIGAWQ LNLLPIDVTP DITNKQVQIN TVVPTLSPVE
IEKRVTYPIE TALAGLNGVE STRSFSRNGF SQVTVIFKES ANLYFMRQQV SERLAQARPN
LPEGAEPQMG PVSTGLGEVF HYSVEYAHPD GKGAAVKDGQ PGWQSDGSFL TDRGERLADQ
VAKLAYLRTV QDWIIRPQLR TTPGVADVDS LGGYVKQYVV EPDAAKLAAY GISYSDLARA
LEDANLSVGA NFIRRSGESY LVRADARIRT IDEIARAVVA HRQNVPVTVG QVATVNVGGE
LRSGAASRNG YETVVGSALM LVGANSRTVA HAVGEKLNKI GTTLPPGVVI VPTLDRSQLV
VATVETVARN LTEGALLVVA ILFWLLGNWR AAAIAALIIP LSLLMSAIGM NALGISGNLM
SLGALDFGLI IDGAVIIVEN TLRRLAERQH REGRTLTLRE RLDETVASSR EMVRPTVYGQ
MVIFLVFVPC LTFQGVEGKM FSPMVITLML ALASAFVLSL TFVPAMIAIL LRSHVAEQEV
RVIVAAKQRY RPWLQRAVAR PLPFIGAGVA VLVLAVAAFG LVGREFMPTL DEQNLNLSSV
RIPSTSIDQS VAIDLPLERA VMSLPEVKTV YSKAGTASLA ADPMPPNASD NYIILKPKDQ
WPAGVTTKEQ VIERIREKTA PMVGNNYDVT QPIEMRFNEL IGGVRSDVAV KLYGDNLDEL
AATAQRVAAV LRKTPGASDV RVPQTSGFPT FDIAFDRAAI ARYGLTVKEV ADTVSTALGG
KAAGQVFDGD RRFDIVVRLP GAQRDNLDML GALPVMLPSA DGQPRGSVPL RQLVQFRFTQ
GLNEVSRDNG KRRIYVEANV AGRDLGSFVD DAAQRIAREV KLPTGSWIEW GGQFQNLQAA
TQRLAIIVPI CFILIAAALY MAIGNAMLTA TVLTAVPLAL AGGVFALALR GIPFSISAAV
GFIAVSGVAV LNGLVLISAI RKRMADGLAP DAAVIEGAME RVRPVLMTAL VASLGFVPMA
IATGTGAEVQ KPLATVVIGG LVTATVLTLF VLPAICGIVL RRRAADSPGS PELARS
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