| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5112 |
|---|
| Symbol | |
|---|
| ID | 8007898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012849 |
|---|
| Strand | + |
|---|
| Start bp | 15050 |
|---|
| End bp | 15739 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644822330 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_002973590 |
|---|
| Protein GI | 241114115 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0266858 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTATC AATTCGACTG GTCCTCCATT CCGCGTGCGT GGCCTTACCT TGTAGAAGGG
CTCGCGACGA CGGGCGGCTT GGTTGCCGCC TCCATCACAG CAGGCATTGC TCTGGGCACC
GTGCTGGCGA TCGGACGGCT GTTCGGCCCG CGTCCCGTCA CCATGACTGT TGCCGCGTAT
GTGAACGTGT TCCGCTCCAT ACCGCTGATC CTGACGATCT TCTGGTTCTT CTTTCTGGTT
CCGGCCATGC TGCGCGCTGT GACCGGTGAT CCGTATCTCA CGGTCGGTCC GATATGGGCT
GCGTTGGCGG CCTTCATTCT CGCCGAGTCT GCCTACTACT GCGAAATCAT CCGCGCTGGC
ATCGGAAGCG TGAAAACCGG GCAACTGAGC GCGGCAAAAG CGCTGGGGCT TACGCAGTGG
CAAGCCTTGC GGCACGTGAT CCTGCCGCAG GCGTTTCGGA ACATGACACC GTCGCTGATC
AACCAGACGA TCGCCCTGCT CAAGGACACC TCACTCGTCT ACGTGATCAG CCTGACCGAC
TTCCTTGGCG CCGCTGGCAA GATCGGCCAG CGCGATGGGC GGCTGGTCGA GATGTACCTG
TTCTCGGCTG CGGTCTACCT GGTGCTGTGC TCGTTTGGCG TCTGGCTCGT CGCCGCCGTG
CAGAAGAAGC GCATGGGAGC CCGGGCGTGA
|
|---|
| Protein sequence | MSYQFDWSSI PRAWPYLVEG LATTGGLVAA SITAGIALGT VLAIGRLFGP RPVTMTVAAY
VNVFRSIPLI LTIFWFFFLV PAMLRAVTGD PYLTVGPIWA ALAAFILAES AYYCEIIRAG
IGSVKTGQLS AAKALGLTQW QALRHVILPQ AFRNMTPSLI NQTIALLKDT SLVYVISLTD
FLGAAGKIGQ RDGRLVEMYL FSAAVYLVLC SFGVWLVAAV QKKRMGARA
|
|---|
| |