Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_5105 |
Symbol | |
ID | 8007891 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012849 |
Strand | - |
Start bp | 7854 |
End bp | 9119 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644822323 |
Product | hypothetical protein |
Protein accession | YP_002973583 |
Protein GI | 241114108 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00753919 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCGATT TAACAAGAAC GCTCATTGAG CGATGGAAGC CTGACAGAGA CGGAACTTTC CAGACGTGGT TTCTCTGGCC CGAGCGCCTC AAGAATTTCC GCTCCATCCG GCGTGGCATT AGTACGGTGG TCAACGAGAT CCAGGCTGGG ACATTTGGCA ACGCCTATCG CGGATCCTCT CTCGAAACCG TGGTCTCCGC GATTGCCGAG CAGCGCCAAA TCTTCAAGGG GGCGGACCAC GCATTCCTCT GGAAACCCAA GTTGCGTATT CCGGACATCT ACGAGAACGC AGATCATCAG CGAGCGTTCG CCAGACTGCT GCATACGTGC AATTGCTGCG ATACCGAGCA AGAGGTAGTT CAAGCGATTC AGCAGTTGAA CCGGCACGGC ATCAAGGGGC TGGGCCCAGC CGTTGCCAAC CTGCTGTATT TCATCCACCC AACTTTGGCG GTTCCCTTCA ACACTGCGAT CGTCAATGGA TACAACGCGC TGACGGGCTC TCGTGTCAAG CTCGGCAAAT GGGACCACTA CTTGGCCATG CGCGAGGGCG TGCTGTCCCT GAATGGACGC TACCGCGACC TGCTGTCCAA TGACCTGGGT GCGATTGCCG GACTGCTGTT CGATATCGGA ATGGAGCGCT ATCCAGCTCC GCCGCAAGAG GGTGGCGCTA CCACGATTGC TGAGTGGGAG AAGGATCTGG CTAAGGCCCG CGAGGAAGCA GCCTCCTTCG CCAAGCAACT TCAAGCAGGC CGAACCGACG ATGCCTCTCA TACAGAGGTG CAAGGCTGGT TGCGCGATCT TGGCAAGGCA TTGGGCTTCG CGGTCTGGGT GGCGACCAAC GACCGCAGCC GCCCCTACAA TGGCGGCGTG CTCAGCGAGG GCTGCCTGGC AACATTGCCG AATTCACTTT TGGTTTCAGG CGCTGACACC GTGCCTCTCA TCGATGTCGT CTGGCTGAAC GCTGTCTCGC TGGAAGTGGA AGCTGCCTTC GAGGTCGAAC ACACCACATC CATCTACTCG GGCATCGTAC GACTGCTAGA TCTGGCTTTG GGCACAGATC AAGCGACAAG GAAACACCTA TTCCTGGTGG CTCCAGATGC CAGAGAGGCG GACGTGCGCG CCCAACTCGC ACGTCCCGCT TTCCGCAGGG TTGCAGAACT AGGCATTCGC TATGTTCCCT ATACCAGTCT CACCGAACAC CGAGATAGCA TTGCGCGTTT TGGCGTGGGG ATCAAGCCGA TCGAAGCTAT CGCTCGAACG CTGTAG
|
Protein sequence | MTDLTRTLIE RWKPDRDGTF QTWFLWPERL KNFRSIRRGI STVVNEIQAG TFGNAYRGSS LETVVSAIAE QRQIFKGADH AFLWKPKLRI PDIYENADHQ RAFARLLHTC NCCDTEQEVV QAIQQLNRHG IKGLGPAVAN LLYFIHPTLA VPFNTAIVNG YNALTGSRVK LGKWDHYLAM REGVLSLNGR YRDLLSNDLG AIAGLLFDIG MERYPAPPQE GGATTIAEWE KDLAKAREEA ASFAKQLQAG RTDDASHTEV QGWLRDLGKA LGFAVWVATN DRSRPYNGGV LSEGCLATLP NSLLVSGADT VPLIDVVWLN AVSLEVEAAF EVEHTTSIYS GIVRLLDLAL GTDQATRKHL FLVAPDAREA DVRAQLARPA FRRVAELGIR YVPYTSLTEH RDSIARFGVG IKPIEAIART L
|
| |