| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5341 |
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| Symbol | ligD |
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| ID | 8007299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012848 |
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| Strand | - |
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| Start bp | 746891 |
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| End bp | 749536 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644822245 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002973505 |
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| Protein GI | 241113670 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0581605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGTG ACAAACTATC GACCTATCGG TCGAAGCGCG ACTTTAAAAA AACGGATGAG
CCGAGCGGTG AAAAACGCCT CTCGCGCAGC AATCGCCGTC GCTTCGTCAT CCAGAAACAT
GATGCCACCC GGCTGCACTA CGACCTGCGG CTCGAGCTGG ATGGCGTCTT CAAATCCTGG
GCGGTCACCA AAGGCCCGTC TCTCGACCCG CACGACAAGC GGCTGGCAGT TGAGGTCGAG
GATCATCCGC TCGACTATGG CGACTTCGAA GGCACCATTC CGAAGGGCCA GTATGGCGGT
GGGACGGTCA TGCTCTGGGA CCGGGGCTAT TGGGAACCGG AAGGAAAGAA GAGCCCCGAG
CAGGCCCTCG CCAAGGGTGA CTTCAAGTTC ACCTTGGAAG GCAAACGCCT GCACGGCAGC
TTCGTGCTGG TGCGCATGCG CAATGATCGC AACGGGGGCA ACCGGACAAA TTGGCTGCTC
ATCAAACACC ATGATGAGTT CTCCGTCGAA AACAAAGGCG AAGCGGTCCT CGAGGAGAAC
GACACCTCTG TCGCCTCCGG CCGAACCATG GAGATGATTG CCGGCGGCAA GGGACGAAAG
CCCAGGCCTT TCATGATCGA GGGTGGCGAC GTTCAGGCTG ATGCCGTTTG GGACAGCAAT
CACGGACTGG CTGCCGAAGA GCGAAAAGAC GACACCGGAG GCGGTCGGAA ATCGAAACCG
GCCACAAAGG TCGATCTGCC GGATTTCATT GCGCCGCAGC TCTGCCGGAC ACTGGAACGC
CCTCCGGCAG GCACTGGCTG GCTTCACGAG ATCAAATTCG ACGGTTACCG GATCCAGATG
CGAGTGCTGG ATGGCGAGGC GACGCTGAAG ACCAGGAAAG GGCTCGACTG GACGGCAAAA
TATCCCGAGA TCGCCGAGGC GGCATCGACA CTGCCCGATG CGATCATCGA CGGCGAGATC
TGCGCCCTCG ACGATCATGG CGCTCCTGAT TTCGCGGCCC TGCAGGCGGC CCTTTCGGAA
GGCAAGACCG GCGAGCTCGT CTATTTCGCC TTCGATCTTC TCTATGAAGG TGGCGAGGAT
GTGCGATCGC TGCCGCTCGT CGAGCGCAAG GCGCGGCTTC AAAGCCTTCT GTCCGACGCC
GGCGATGATC CGCGCGTCCG TTTCGTCGAG CATTTCGACA CCGGCGGTGA TGCAGTTCTC
CAGTCTGCCT GCAAGCTTTC ACTGGAAGGC ATCGTCTCGA AAGAGGCGGA TGCACCCTAT
CAATCCGGCC GCACCGAAAG CTGGGCGAAG TCGAAATGCC GCTCCGGCCA CGAGGTGGTG
ATCGGCGCCT ATGCCCAGAC CAACGGGAAA TTCCGATCCC TGCTGGTCGG CGTCTACCAC
GGCGACCACT TCGTCTATGT CGGCCGCGTC GGCACGGGAT ATGGCGCGAA GAAAGTGGAA
ACGCTGCTTC CGAAGTTGAA AGCGCTCGAG ACGGCGAAAT CGCCGTTCAC CGGCATCGGC
GCGCCGAAGA AGGAGGCCGA GGTCATCTGG CTAAAACCCG AGCTAGTGGC GGAAATCGAA
TTCGCAGGCT GGACCGCAGA CGGCATTGTC CGGCAGGCGG CCTTCAAGGG ACTGCGGGAA
GACAAGCCGG CCATAGAGGT CAAGGCCGAA CGGCCGGCAA AGCCCGCGCA AACTGACGTG
CCACAGCCGA CGGTGGAGGC GAAAACCAGA CCCGTCCGCA AAAAAGGCGC CAAGGCCGAG
GTCATGGGGG TGCTGATCTC CAACCCGGAC AAGCCGCTGT GGCCGGATGC CAATGACGGC
AAAACCGTTA CCAAGGAGGA CCTGGCCTGC TACTACGAAG CCGTCGGTTC GTGGCTGATC
GAGCACATCA AGGGACGTCC GTGTTCGATC ATCCGTACAC CCGACGGGAT CGGCGGCGAG
CAGTTTTTTC AGCGTCATGC GATGCCCGGC ACCTCGAATC TTCTCGAATT GGTCAAGGTT
TTCGGCGACA AAAAACCATA CCTGCAGATC GACCGTATCG AAGGCCTTGC TGCCGTCGCG
CAGATCGGCG CCGTCGAGCT GCATCCCTGG AATTGCGAAC CGCGTCAGCC TGAGGTGCCC
GGCCGGCTCG TCTTCGACCT TGATCCAGGT CCGGATGTGC CCTTCTCCGC GGTCGTTTCG
GCGGCCCGCG AAATGCGGGA CCGTCTCGAC GCGCTGGGAA TGATCAGCTT TTGCAAGACC
ACTGGGGGCA AGGGTCTGCA CGTCGTCACT CCGCTTGCGA TCAACAAACG CAAGCCGCTT
TCGTGGGCCG AAGCGAAGGG ATTTGCCCAC GACGTCTGCC AGCAGATGGC ACGCGACAAT
CCCGAACTCT ATCTGATCAA GATGACGAAG AGCCTGAGGG ATGGCCGGAT CTTCCTGGAC
TATCTGCGCA ACGATCGGAT GGCGACGGCG GTTGCACCTT TGTCGCCGCG CGCCCGGCCG
GGTGCCACCG TCTCGATGCC GCTGACCTGG ACCCAGGTCA AATCTGATCT TGACCCGAAG
CGCTTCACCA TTCGCACCGT CCCGACGCTG CTGTCGAAGT CCTCTGCCTG GGAGGATTAC
GGCGATGGCA AGCGTCCGCT GGAACAGGCG ATCAAGCGGC TCGGCAAAGT CTCCAAAGTG
GCTTGA
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| Protein sequence | MASDKLSTYR SKRDFKKTDE PSGEKRLSRS NRRRFVIQKH DATRLHYDLR LELDGVFKSW
AVTKGPSLDP HDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGY WEPEGKKSPE
QALAKGDFKF TLEGKRLHGS FVLVRMRNDR NGGNRTNWLL IKHHDEFSVE NKGEAVLEEN
DTSVASGRTM EMIAGGKGRK PRPFMIEGGD VQADAVWDSN HGLAAEERKD DTGGGRKSKP
ATKVDLPDFI APQLCRTLER PPAGTGWLHE IKFDGYRIQM RVLDGEATLK TRKGLDWTAK
YPEIAEAAST LPDAIIDGEI CALDDHGAPD FAALQAALSE GKTGELVYFA FDLLYEGGED
VRSLPLVERK ARLQSLLSDA GDDPRVRFVE HFDTGGDAVL QSACKLSLEG IVSKEADAPY
QSGRTESWAK SKCRSGHEVV IGAYAQTNGK FRSLLVGVYH GDHFVYVGRV GTGYGAKKVE
TLLPKLKALE TAKSPFTGIG APKKEAEVIW LKPELVAEIE FAGWTADGIV RQAAFKGLRE
DKPAIEVKAE RPAKPAQTDV PQPTVEAKTR PVRKKGAKAE VMGVLISNPD KPLWPDANDG
KTVTKEDLAC YYEAVGSWLI EHIKGRPCSI IRTPDGIGGE QFFQRHAMPG TSNLLELVKV
FGDKKPYLQI DRIEGLAAVA QIGAVELHPW NCEPRQPEVP GRLVFDLDPG PDVPFSAVVS
AAREMRDRLD ALGMISFCKT TGGKGLHVVT PLAINKRKPL SWAEAKGFAH DVCQQMARDN
PELYLIKMTK SLRDGRIFLD YLRNDRMATA VAPLSPRARP GATVSMPLTW TQVKSDLDPK
RFTIRTVPTL LSKSSAWEDY GDGKRPLEQA IKRLGKVSKV A
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