| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5010 |
|---|
| Symbol | |
|---|
| ID | 8007601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012848 |
|---|
| Strand | - |
|---|
| Start bp | 395682 |
|---|
| End bp | 396962 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644821925 |
|---|
| Product | type III effector Hrp-dependent outers |
|---|
| Protein accession | YP_002973185 |
|---|
| Protein GI | 241113350 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.447343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.232988 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTT TCCTCGGATC AATCGCTGAC GACTATACGG GCGCATCCGA CCTCGCCAAC
ACCCTGACGA AGAACGGTCT GCGCACGGTA CAGACGGTCG GCATTCCCGA CCCGTCGCTG
GCACTACCGG ATGTCGACGC CGTGGTCGTT TCCCTGAAGA TCCGCTCCGT CTCGGCCTCG
GACGCCGTGA CGGCGGCGGC GAGCGCCGAG CGATGGCTGC GCCAGCGGGG TGCCGGCCAT
GTGCTCTACA AGATCTGCTC GACCTTCGAT TCCACCGATG CCGGCAATAT CGGTCCGGTC
ACCGAAGCCT TGAGGGAGGC GGCGGGCGGC GGCGTCGTGC TGGTGACGCC CGCCTTTCCG
GAAACGGGAC GCACCGTCTA TCTTGGCCAT CTCTTCGTCG GCGGACAGCC GCTGAATGAA
AGCCCGCTCA AGGATCACCC CCTCAATCCG ATGCATGACG CCAATCTCGT TCGGGTGCTC
ACGCGACAAT CGCGCAATGC TGTCGGGCTG GTCGATCTCA CGACCATCGG CGCCGGACCC
GGCGCCGTCA AAATGAGGCT TGATTCCTTT CGCACCGCAG GCGTCACCGC TGTTATCGCC
GATGCGATTT TCGAACGCGA TCTGGAAACG CTCGGCGAGA TTGCGTTGGA AATGCCGGTG
TCCACCGGTG CGTCCGGCCT CGGCCTCGGC CTTGCCCGCG CGCTCGTCCG CTCCGGTCGG
ATTTCCTCCG GCGGCGCAAC GACGGAGGAC GCCATTCGCC CGGTGGGCGG GCTTTCCGCG
ATCGTTGCCG GCAGTTGCTC CAAGGCGACG CTCCGCCAGC TCGACATCGC CGAACGGTCG
ATGCCCGTCC TGCGGCTCGA CCCGGAGCGG CTGCTTGCCG GTCCCGATGA AATCGCCGCG
GCGATTTCCT GGGCCGGAGA CCGCATCTCC GCCGGCCCCG TCGTCATCGC CGCGAGTGCT
GCGCCTGAAA CCGTGTCCCG GCTGCAATCG CTCCATGGAC GAGAGGCCTC CGGCCACGCG
ATCGAGACCG CGACGTCGAT CATCACAGCC GAACTGGTGG AGAGAGGCGT GCGGCGCCTG
GTGGTCGCCG GCGGCGAAAC CTCGGGCGCG GCCGTCGACA GGCTCGCCAT TCCGGCATTT
CTGATCGGCC CGGAGATTGC GCCCGGCGTG CCGGTGCTGC GCACAGTCGG CAATGCGCAG
GGCGACATGC TTCTGGCGCT GAAATCAGGA AACTTCGGAG GCGAGGATTT CTTTACGGCA
GCGCTGGCGA TGATGCGCTG A
|
|---|
| Protein sequence | MAIFLGSIAD DYTGASDLAN TLTKNGLRTV QTVGIPDPSL ALPDVDAVVV SLKIRSVSAS
DAVTAAASAE RWLRQRGAGH VLYKICSTFD STDAGNIGPV TEALREAAGG GVVLVTPAFP
ETGRTVYLGH LFVGGQPLNE SPLKDHPLNP MHDANLVRVL TRQSRNAVGL VDLTTIGAGP
GAVKMRLDSF RTAGVTAVIA DAIFERDLET LGEIALEMPV STGASGLGLG LARALVRSGR
ISSGGATTED AIRPVGGLSA IVAGSCSKAT LRQLDIAERS MPVLRLDPER LLAGPDEIAA
AISWAGDRIS AGPVVIAASA APETVSRLQS LHGREASGHA IETATSIITA ELVERGVRRL
VVAGGETSGA AVDRLAIPAF LIGPEIAPGV PVLRTVGNAQ GDMLLALKSG NFGGEDFFTA
ALAMMR
|
|---|
| |