| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_2888 |
|---|
| Symbol | dapF |
|---|
| ID | 7978111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | - |
|---|
| Start bp | 2917276 |
|---|
| End bp | 2918130 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644799694 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_002950834 |
|---|
| Protein GI | 239828210 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 54 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAT TTTCGTTTAC AAAAATGCAT GGGCTCGGCA ATAGTTATAT ATATGTAAAT
ATGTTTGAAG AAACAATTCC AGAATCATTA TTATCGTCCT TAGCGGTGAA AGTATCCAAC
GTAAATACCG GAATCGGAGC GGATGGCATG ATTCTCATTT GCCCGTCAGA AGTAGCTCCG
GTAAAAATGC GGATTTTTAA TAGCGACGGT TCTGAAGGGA AAAATTGCGG CAATGGCTTG
CGTTGTGTCG CAAAATATGC ATATGAGCAT GGAATGGTAA AAGACCGATC CTTTTTTATT
GAAACATTGT CCGGACTCGT GAAGGCAGAG GTTACCGTAG AAAATGGAGC CGTTACAAAC
GTTACCATTG ATATGGGAAA GCCGCGTTTA AAGCGGAGCG AGATCCCGAT GATTGGTCTG
GATGCGGAAC GAGTCGTTGC AGAACCGTTT GAAGTCGATG GAAAACAGTA TGAAATTACA
GCCGTTTCGA TGGGAAACCC TCATGTCATT TTTTACGTGG ATGATATCAC AACAGCGCCG
GTAACGACAC TTGGTCCGAT TGTGGAAAAG GACGAGCGGT TTCCTGAAGG GGTAAATGTC
GAATTCGTCG AGGTGGTAAA CGACCATGAA CTCCATTTTC GCGTATGGGA GCGCGGCTCT
GGAGTGACGC AAGCTTGCGG TACAGGGGCG TGTGCAGCTG TTGTTGCTTC CGTATTAAAT
GGAAAAACAG CGCGAAATAA AGAAACGGTC GTCCATTTGG CAGGCGGGGA TTTAATCATT
ACATGGACAG ATGAGGGAAA TGTGCGGATG ACAGGACCGG CGGAAACGAT TTGTACAGGT
GTGTATTACT ATTAA
|
|---|
| Protein sequence | MNKFSFTKMH GLGNSYIYVN MFEETIPESL LSSLAVKVSN VNTGIGADGM ILICPSEVAP
VKMRIFNSDG SEGKNCGNGL RCVAKYAYEH GMVKDRSFFI ETLSGLVKAE VTVENGAVTN
VTIDMGKPRL KRSEIPMIGL DAERVVAEPF EVDGKQYEIT AVSMGNPHVI FYVDDITTAP
VTTLGPIVEK DERFPEGVNV EFVEVVNDHE LHFRVWERGS GVTQACGTGA CAAVVASVLN
GKTARNKETV VHLAGGDLII TWTDEGNVRM TGPAETICTG VYYY
|
|---|
| |