| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_2197 |
|---|
| Symbol | |
|---|
| ID | 7978370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | + |
|---|
| Start bp | 2255812 |
|---|
| End bp | 2257389 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644799012 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_002950172 |
|---|
| Protein GI | 239827548 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000367655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTTCGCA TTTTAGTTTC CGACGCAATT AGCGAAGAAG GATTAGCCCC ACTACGAAAA
TCCGAACAAA TTGAAATCGT ACAAAAAAAG GTAACAGAAG TAGAAGAACA ACTTCATGAA
TTTGACGCCT TGCTTGTTCG CAGCGCTACG AAAGTGACAG AAGAACTCCT TTCCAAAATG
CCAAATTTAA AAATCATCGG GCGCGCTGGT GTGGGAGTTG ACAATATTGA TGTGGAAGCA
GCAACGAAGC GCGGGATTGT CGTTATTAAT GCTCCAAACG GAAATACGAT TTCTGCTGCT
GAACACACAT TTGCTATGAT GGCTGCGCTT GTGCGCCATA TTCCGCAAGC ACATGTTTCT
GTGAAATCCC GGGAGTGGAA TCGTTCCGCG TTCGTTGGAA CAGAGTTGCA AGGAAAACAT
TTAGGAATTA TCGGATTTGG CCGCATCGGA TCCGAAGTAG CCAAACGCGC GCGCGCATTC
GGCATGACGG TTCACGTATA TGATCCATTT TTAACAAAAG AACGGGCGGA AAAACTTGGT
GTATCGATCC ATACACTTGA TGAAGTGCTT GCTTGCTCTG ATATTATTAC CGTACACACT
CCATTAACTA AAGAAACAAA GGGGCTTCTT GGCGAAAAAA ATTTGGCCAA AACGAAAAAG
GGCGTATACC TTATCAACTG TGCCCGCGGC GGTATTATTG ACGAACAAGC ATTAATTCCA
TTTCTTCAAA GCGGCCATGT TGCAGGGGTA GCTCTCGACG TATTCGAACA AGAACCGCCA
GGCGATCATC CGCTTTTTGC GTTTGATAAT GTGATTGTCA CCCCTCACCT TGGCGCTTCG
ACTATAGAGG CGCAGCTCAA TGTTGCTACA CAAGTTGCCG AGGAAATATT ACACTTTTTA
GAAGGAAAAC CAGTTACATC ATCTATTAAT CTACCAACAT TGTCTAAAGA CGTATATGAA
AAAATTCAAG CATTCTACAA TTTAGCGAAA AAAATGGGCA CGATCGCATC ACAATATATG
AATATTCCTG TCCAAGAACT ATCCGTAACC TATGCGGGAA CGGTTGCCGA TTTAGAAACA
ACATATATCA CTCGCAGCTT GCTCGCTGGA TTTTTACGGC CGCGCGTCGC TTCGACGGTT
AACGAAGTGA ATGCCGCCAT GATCGCAAAA GAACGCGGCA TTACGTATGG AGAAAAATTT
TCCGATGAAA CACATGGTTA CGCAAATTGC ATTTCCCTTA CCGTACACGG AGAAAACAGA
ACGTTTACGA TTAAAGGCTC GCACATTCCA AACTATGGCG ACCGCATCGT TCACTTCGAT
GGATTTACGA TTGATTTTGC ACCAGATGGA CATCTTCTTT ACATCCAGCA TCAAGACCGA
CCAGGAATGA TCGGAAAGGT CGGAAACGTC CTCGGCGAAC ATCAAGTAAA TATCGCTACA
ATGCAAGTCG GACGCGAGCA GGCAGGTGGA AAGGCAATTA TGATGCTTTC GTTAGATAAA
CCGATTGATG ACGCTTTACT TCAGAAATTA GCTGAAATTG AAGATATTGA AACGGTAAAA
AGATTAGAAG TTTCATAA
|
|---|
| Protein sequence | MFRILVSDAI SEEGLAPLRK SEQIEIVQKK VTEVEEQLHE FDALLVRSAT KVTEELLSKM
PNLKIIGRAG VGVDNIDVEA ATKRGIVVIN APNGNTISAA EHTFAMMAAL VRHIPQAHVS
VKSREWNRSA FVGTELQGKH LGIIGFGRIG SEVAKRARAF GMTVHVYDPF LTKERAEKLG
VSIHTLDEVL ACSDIITVHT PLTKETKGLL GEKNLAKTKK GVYLINCARG GIIDEQALIP
FLQSGHVAGV ALDVFEQEPP GDHPLFAFDN VIVTPHLGAS TIEAQLNVAT QVAEEILHFL
EGKPVTSSIN LPTLSKDVYE KIQAFYNLAK KMGTIASQYM NIPVQELSVT YAGTVADLET
TYITRSLLAG FLRPRVASTV NEVNAAMIAK ERGITYGEKF SDETHGYANC ISLTVHGENR
TFTIKGSHIP NYGDRIVHFD GFTIDFAPDG HLLYIQHQDR PGMIGKVGNV LGEHQVNIAT
MQVGREQAGG KAIMMLSLDK PIDDALLQKL AEIEDIETVK RLEVS
|
|---|
| |