| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_1191 |
|---|
| Symbol | |
|---|
| ID | 7979302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | + |
|---|
| Start bp | 1243076 |
|---|
| End bp | 1244632 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644798144 |
|---|
| Product | phosphodiesterase |
|---|
| Protein accession | YP_002949317 |
|---|
| Protein GI | 239826693 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1418] Predicted HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000197151 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTCAA TCATCATCTC CGCTTTGCTT GCCTTAGTTG TCGGTGCCGT TGTCGGCTTT
TTTATTCGAA AATCCATTGC AGAAGCGAAA ATTGGCGGTG CACAAGCAGC TGCAAACCAA
ATCATTGAAG ATGCGAAACG AGAAGCTGAT GCGCTGAAAA AGGAAGCGCT TCTTGAAGCA
AAGGATGAAA TTCATAAACT TCGTACAGAG GTTGAACGTG AAATTCGCGA TCGAAGAAGC
GAGTTGCAAA AACAAGAAAA CCGATTGCTG CAAAAAGAAG AAAATCTTGA CCGAAAAGAT
GAGGCGCTGA ATAAACGAGA AGCGCTCTTA GAATCGAAAG AGGAAGCACT GAATCAAAGA
CAACAACATA TTGAACAGAT GGAAAGCAAA GTGGAAGAGC TCGTTCAAAA GGAACAAATG
GAATTGGAAC GAATTTCTGG TCTAACACGC GAAGAAGCAC GCCAAGTTAT TTTGGAGCGT
GTCGAAAAAG AGCTATCTCA TGAAATTGCA ATGATGGTGA AAGAAGCCGA GACCCGCGCG
AAAGAAGAGG CGGATAAAAG AGCAAAAGCA ATTTTATCGC TGGCGATTCA GCGCTGTGCG
GCTGACCATG TCGCCGAAAC GACCGTATCT GTCGTTAATT TGCCAAACGA TGAAATGAAA
GGCCGGATCA TTGGTCGTGA AGGACGGAAT ATTCGTACGC TTGAAACGCT CACCGGTATT
GATTTAATTA TCGATGATAC GCCGGAGGCA GTTATTTTAT CGGGATTTGA TCCAATCCGC
CGTGAAACGG CTAGAATTGC TTTAGACAAA CTTGTTCAAG ATGGACGCAT TCACCCGGCA
AGAATTGAGG AAATGGTCGA AAAAGCAAGA CGTGAAGTGG ATGAGCATAT TCGTGAAGTC
GGCGAACAAA CCACCTTTGA AGTTGGCGTT CACGGGTTAC ATCCGGATTT AATAAAAATT
TTAGGACGCC TCAAATTCCG GACAAGCTAC GGGCAAAACG TCTTGAAGCA TTCAATTGAA
GTGGCGTTTT TAGCCGGGTT GATGGCGGCG GAACTTGGCG AAGATGAAAT GTTAGCAAGA
CGTGCTGGCC TCCTGCACGA TATTGGCAAG GCGATTGACC ATGAAGTGGA AGGAAGCCAT
GTTGAAATCG GTGTAGAATT GGCGACAAAA TATAAAGAAC ACCCGGTTGT CATTAACAGC
ATCGCTTCCC ATCATGGTGA TACGGAGCCA ACTTCCGTCA TTGCCGTGCT CGTTGCAGCG
GCTGATGCAC TTTCTGCGGC AAGACCGGGA GCGCGCAGTG AAACATTGGA AAACTATATT
CGCCGCCTCG AAAAATTGGA GGAAATCGCT GAATCGTACG AAGGTGTGGA GAAATCATAT
GCGATTCAAG CAGGTCGAGA AGTGCGTATT ATGGTGAAGC CGGATATGAT TGATGATTTA
GAAGCGCATC GATTGGCGCG GGAAATTCGT AAACGGATCG AGGAGGAACT CGATTATCCG
GGACACATTA AGGTTACCGT TATTCGTGAA ACAAGAGCGG TAGAATATGC AAAATAA
|
|---|
| Protein sequence | MGSIIISALL ALVVGAVVGF FIRKSIAEAK IGGAQAAANQ IIEDAKREAD ALKKEALLEA
KDEIHKLRTE VEREIRDRRS ELQKQENRLL QKEENLDRKD EALNKREALL ESKEEALNQR
QQHIEQMESK VEELVQKEQM ELERISGLTR EEARQVILER VEKELSHEIA MMVKEAETRA
KEEADKRAKA ILSLAIQRCA ADHVAETTVS VVNLPNDEMK GRIIGREGRN IRTLETLTGI
DLIIDDTPEA VILSGFDPIR RETARIALDK LVQDGRIHPA RIEEMVEKAR REVDEHIREV
GEQTTFEVGV HGLHPDLIKI LGRLKFRTSY GQNVLKHSIE VAFLAGLMAA ELGEDEMLAR
RAGLLHDIGK AIDHEVEGSH VEIGVELATK YKEHPVVINS IASHHGDTEP TSVIAVLVAA
ADALSAARPG ARSETLENYI RRLEKLEEIA ESYEGVEKSY AIQAGREVRI MVKPDMIDDL
EAHRLAREIR KRIEEELDYP GHIKVTVIRE TRAVEYAK
|
|---|
| |