| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_0698 |
|---|
| Symbol | |
|---|
| ID | 7978878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | + |
|---|
| Start bp | 767743 |
|---|
| End bp | 769275 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644797682 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002948856 |
|---|
| Protein GI | 239826232 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAATC GATTGCTCGC TCTGTTTATA CTTCCGTTTC TTCTTTTTTA TGCGTTTCCG
GTACAAGCCG CTGAAAAAGA AGAACGAACC TGGCAGGATG AAGCAATTTA TTTCATCATG
GTTGACCGCT TTAACAACAT GGACCCAAGC AATGATTACA ATGTCAACGT CAATGACCCG
AAAGGCTATT TCGGCGGTGA TTTAAAAGGA GTGACTGCCA AACTGGACTA CATTAAAGAG
ATGGGGTTTA CGGCGATTTG GCTCACGCCG ATTTTCAAAA ACGAACCGGG CGGGTACCAT
GGCTATTGGA TTCAAGACTT TTACAAAGTC GATCCGCATT TTGGCACGAT GGAAGATTTA
AAAACGTTAG TGAAAGAAGC GCATAAACGC AACATGAAGG TGATTCTGGA TTTTGTCGCC
AACCATACCG GCTACCACCA TCCATGGCTG AACGACCCAG CGAAGAAAGA TTGGTTTCAT
GAGAAAAAAG AAATTTTCGA CTGGAATGAC CAAAAACAAT CAGAAAATGG ATGGATATAC
GGACTGCCTG ATTTAGCGCA AGAAAACCCT GAGGTGAAGC GGTATTTAAT TGATGCGGCA
AAGTGGTGGA TCAAACAGAC CGATATTGAC GGCTATCGTT TAGATGCTGT TCGCCATGTG
CCAAAATCAT TTTGGAAAGA GTTTTCCAAA GAAGTAAAAT CAGTTAAAAA AGACTTCTTG
CTGCTTGGAG AAGTATGGGC TGATGATCCG CGCTATATTG CGGATTACGG AAAATACGGA
ATTGACGGTT TCATCGATTA CCCGCTTTAC AATGCGGTAA CGACGACATT GACGAAACGG
GATCAATCAT TGCGGCCGCT TTATGACGTA TGGGAGTATA ATAAAACATT TTACGACCGT
CCGTATTTGC TGGGAACATT TTTAGACAAC CACGATACGG TCCGGTTTAC GAAGCTCGCT
TTGGACAACA AACAAAACCC GATTTCCAGA ACAAAGCTTG CTTTATCATA TTTATTCTCA
GCTCCTGGCA TTCCGATTAT GTATTATGGA ACGGAAATTG CGATGAACGG GGGAGAAGAC
CCGGATAACC GCCGTTTAAT GGATTTTCGC GCCGACCGGG AAATCATTGA TTACATTAAA
AAACTTGGCG AATTGCGGCA AAAACTTCCT TCCTTGCGGC GCGGTGATTT TACGTTGCTG
TATGAAAAAG ACGGCATGGC CGTATTTAAG CGCCATTACA AAGACGAAAC AACGGTGATC
GCCATTAATA ATACAGGAAA AACACAAAAG GTGCATATCA CGAATGACCA ACTGACGCCG
GGAAAAGAGC TGCGCGGGCT GCTTGCCGGC GATTTAGTGC GGAGCGGCCG CGATGGCTAT
GATATTATTA TCAATCGCGA AACAGCGGAA ATTTACGCGC TTGCCGATAA AACAGGGATC
AATATTCCTT TTATCATGGC GATTGTCGCT GTTTACGTAT TATTTATCCT ATTTTTGTAC
CTTGTTAAAA GGCGGTCGAA ACAGGCGACG TAA
|
|---|
| Protein sequence | MGNRLLALFI LPFLLFYAFP VQAAEKEERT WQDEAIYFIM VDRFNNMDPS NDYNVNVNDP
KGYFGGDLKG VTAKLDYIKE MGFTAIWLTP IFKNEPGGYH GYWIQDFYKV DPHFGTMEDL
KTLVKEAHKR NMKVILDFVA NHTGYHHPWL NDPAKKDWFH EKKEIFDWND QKQSENGWIY
GLPDLAQENP EVKRYLIDAA KWWIKQTDID GYRLDAVRHV PKSFWKEFSK EVKSVKKDFL
LLGEVWADDP RYIADYGKYG IDGFIDYPLY NAVTTTLTKR DQSLRPLYDV WEYNKTFYDR
PYLLGTFLDN HDTVRFTKLA LDNKQNPISR TKLALSYLFS APGIPIMYYG TEIAMNGGED
PDNRRLMDFR ADREIIDYIK KLGELRQKLP SLRRGDFTLL YEKDGMAVFK RHYKDETTVI
AINNTGKTQK VHITNDQLTP GKELRGLLAG DLVRSGRDGY DIIINRETAE IYALADKTGI
NIPFIMAIVA VYVLFILFLY LVKRRSKQAT
|
|---|
| |