| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_0688 |
|---|
| Symbol | |
|---|
| ID | 7978868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | + |
|---|
| Start bp | 752403 |
|---|
| End bp | 755258 |
|---|
| Gene Length | 2856 bp |
|---|
| Protein Length | 951 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644797673 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002948847 |
|---|
| Protein GI | 239826223 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00399648 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGT ACCGTCTACA TTGTCATAAT ACAGAAGAAT TGTATGACTT TATCGCACAG
CACCACCTTG CCCAATATAA ACATATTTTT GTACAAGTTG CAGCCAATAA AGTCGATCAG
CTTGAACTTC GGAAAATGAT TGGGTTGCTT CAGCGTTATC TTCCACAAGC GCAGCTATTT
GGCGTCACAT ACGGCGAACA TTTTGGTTTC GATGACAAAT TTTTTATATG TTTTACTGTG
TTCGAAAAAG TTAGCGTTCA CTCTGTTTTA TTATCATACG AAGAATTTGC AAATGAACTT
GAGCTTGTAA CATATATTTC GGATACGCTT ATAACGGAAG AAACAAATCT TCTTCTTTTA
TTTACTGACC AGAATAGCAA TCTTCATTCC CTTATTCGCC ATATACCACT AGCAAATGAA
AAAACGGTTG TGATTGCCGG GCGAATTAAT GAAGGAGAGC GTTTGTTTTC GCATGAAGGA
TTTGTCACTG GCGGTATGCT GGCAATTAGT TTTAACGGTT CTGCTTTTCG TGTTCAATCA
TCACATCCGT TTTTATGGGA ACCAGTTGGC ACTGCTTTTC GAATAACGAA ATGCAGCGGA
AATAAGTTAT ACGAGCTTGA TGGAAAAAAA GCAATAAAAT TGCTGCAACG TTATTTAGGA
AAGGAATTTA TCGATCGATT GCCTTTTTCA GGAGCGGAAT TTCCGTTCAT TATTGAGAAA
AATGGCCATA AAGAATGTTT ATCCATCGTT AAAGTAAATG AGGATGGTTC TATTGAACTA
AACGGTTACG TCCATCAAGG GGAGAAGGTT AAGTTTAGCT ACGTTCATTT AACGTCATTG
GTTTGGACTA TATCCGATGA ATTAAACAAA TTGACGAAAA AATACACGGA AGCGATTTTT
TTCTATCGTA GCATCGCCGT ACAAGGCTAT GCATATCCAG TGCTAGAGCA AATAACGACA
ACGCTGGAGC AAGTTGCTCC TACTTTTACG CCATTTATAT TTGTAGAACT GGTGATCAAG
GATAGAGATA TACGTTCAGC CACTTTTAGC ATGCTTGCGT TATCGGAGGG AAATCAGAAC
GGAGAGAATA GCAGTGCTTC CGTTTCTTTA TCTATTCCTG AGATGTTTCA AGGGGTGATG
ACGCTAGCGA ATTTAATGTC CACCTCCTCT CGAGAAATGG AGAGGCTTCG CGTTCATGTA
CAAATATCAC AATCACTTTT TGAACATAAT ACAGATATTG TATATTCTAC TGATTTACAT
GGGAATTTTA CGAACGTGAA TCCCGCTTTC GAGAAAATTC TAGGTTACAC AAAAGAGGAA
ATTTTACATA CGAACGCTTT AAAATACATG CATCCGAATG ATGTACCTCG TGTTAGCAGA
CATTTTTATC GAGCTTTGCG TGGAAAAATT CAATATTATA ATTTGGAGAT TCCTACAAAA
TCAGGGGAAA CATTATTATT CCAAATTAAA AACGTTCCAA TTATCGTTGA TGGGAAAAAA
GTAGGCATTT ACGGGATTGG AAGAGATATT ACCGAACAAA AAAAAGCGGA AGAAAAAATT
TCATATTTAG CGTATTATGA CCCGGATACC CATCTTCCAA ACCGGACAAA GTTTATGGAA
ATCATCGATG AACAGTTAGA AAAGGCGAAG CAAAAAAATA GGAAGCTAGC AGTCGTATTC
ATCGATTTAG ACCGTTTTAA GCTAGTTAAC GATAGTATAG GGCATTATGC GGGAGATGAA
ATTTTAAAAC AAGTCGTTCA GCGCATTCAG CATGTTTTGC CAGCTGGAGC GTATTTAGGA
AGGTTTCATG GGGATAAGTT TTGTTTACTT TTAACAGAGC GCACCGATTC AGAAGGAGTG
TTTAAAACAG CAGCACACAT TTCAAAAGAA GTGATGAAGC CGATTGTATA TGAAAACAAA
GAATTTTTTA TCACTATAAG TATTGGAATC AGCTTCTATC CAAACGATGG TGTGGATAAA
CATTCATTGC TCAAAAATGC TGATATCGCC CTAAATAAAG CAAAACAGAG TGGGGGAAAT
CGAATACAAT TTTATTCTGC AAAAATGAAT GAAGAAACGT TATACCGTTT AGAGATGGAG
AGATATTTGC GAAAAGCACT GGAAAATCAA GAATTTTTTC TATGCTATCA GCCGATTATT
GATATACATA AAGGTGTTAT TGTCGGAAAC GAAGCATTAA TTCGTTGGCG CCATCCAAAG
CTAGGACTTG TTAGACCGAA TGAATTTATT TCACTAGCAG AAGAGACGGG GCTCATTCAT
GAAATTGGAA GATGGGTGTT AGTAACGGCT TGCAAACAAA CAAAAAAATG GCAGCAATTA
TGGAATCAAC AACTCTTCGT TTCTGTGAAT GTGTCGGCGA GACAATTTCA GCATGAAGGC
TTTATTGATG ATGTAAAACA GGCGCTAGAG CAATCGCAGC TCTCCCCAAA TTGCTTACAT
TTAGAATTAA CGGAGAACTC TATGCTTCGT AATCTTCATT ACAGTATTCA AGTAATGAAA
GAATTACAGC AGCTCGGTGT CGGTATTGCT ATTGATGATT TTGGAAGTGG ATACGCTTCT
TTTAGTTATT TAAAAAATTT ACCAGTAAAC ATATTAAAAA TTGATCGTTC ATTTGTTGAG
CAAATGCATA CAAATTCTTC GGATATCGCG ATCGTAAAGG CAATTATTAC GATGGGGCAC
GGATTAGGGC TAAAAACAGT AGCCGAAGGG GTGGAAACGG TCGAGCAGCT GGAATTGTTA
AAAATGCTGC ATTGCCATCA CGCACAAGGA TATGCATTGT ATCGTCCGGT AACCGCAGAA
GAATTGTCAA CATATATGAC GGTAAGCCAC AAATAG
|
|---|
| Protein sequence | MNMYRLHCHN TEELYDFIAQ HHLAQYKHIF VQVAANKVDQ LELRKMIGLL QRYLPQAQLF
GVTYGEHFGF DDKFFICFTV FEKVSVHSVL LSYEEFANEL ELVTYISDTL ITEETNLLLL
FTDQNSNLHS LIRHIPLANE KTVVIAGRIN EGERLFSHEG FVTGGMLAIS FNGSAFRVQS
SHPFLWEPVG TAFRITKCSG NKLYELDGKK AIKLLQRYLG KEFIDRLPFS GAEFPFIIEK
NGHKECLSIV KVNEDGSIEL NGYVHQGEKV KFSYVHLTSL VWTISDELNK LTKKYTEAIF
FYRSIAVQGY AYPVLEQITT TLEQVAPTFT PFIFVELVIK DRDIRSATFS MLALSEGNQN
GENSSASVSL SIPEMFQGVM TLANLMSTSS REMERLRVHV QISQSLFEHN TDIVYSTDLH
GNFTNVNPAF EKILGYTKEE ILHTNALKYM HPNDVPRVSR HFYRALRGKI QYYNLEIPTK
SGETLLFQIK NVPIIVDGKK VGIYGIGRDI TEQKKAEEKI SYLAYYDPDT HLPNRTKFME
IIDEQLEKAK QKNRKLAVVF IDLDRFKLVN DSIGHYAGDE ILKQVVQRIQ HVLPAGAYLG
RFHGDKFCLL LTERTDSEGV FKTAAHISKE VMKPIVYENK EFFITISIGI SFYPNDGVDK
HSLLKNADIA LNKAKQSGGN RIQFYSAKMN EETLYRLEME RYLRKALENQ EFFLCYQPII
DIHKGVIVGN EALIRWRHPK LGLVRPNEFI SLAEETGLIH EIGRWVLVTA CKQTKKWQQL
WNQQLFVSVN VSARQFQHEG FIDDVKQALE QSQLSPNCLH LELTENSMLR NLHYSIQVMK
ELQQLGVGIA IDDFGSGYAS FSYLKNLPVN ILKIDRSFVE QMHTNSSDIA IVKAIITMGH
GLGLKTVAEG VETVEQLELL KMLHCHHAQG YALYRPVTAE ELSTYMTVSH K
|
|---|
| |