Gene GWCH70_0290 details

Gene Information

• Locus tag: GWCH70_0290
• ID: 7976155
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacillus sp. WCH70
• Kingdom: Bacteria
• Replicon accession: NC_012793
• Strand: +
• Start bp: 329044
• End bp: 331032
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 644797283
• Product: TRAP transporter, 4TM/12TM fusion protein
• Protein accession: YP_002948483
• Protein GI: 239825859
• COG category: [R] General function prediction only
• COG ID: [COG4666] TRAP-type uncharacterized transport system, fused permease components
• TIGRFAM ID: [TIGR02123] TRAP transporter, 4TM/12TM fusion protein

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.433897
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATGGC GTAAAAAAAA AGATATGAAA GAAAAGCCGC TTGAAGAATT GTCTCAAGAG 
GAAATACTAG AAAAATATGA CCGAGAAAGT TCCTACAGAA AAAATCTCGG GAAATGGTCA 
TGGGTTGTCC TCTTTTTAGG TGTATCATTA ACGTTGTTCC ATTTGTACAC AGGGTATCGC 
GGCGCGTTTG AAGCGAGAAT TCAAGGTCCT ATACACCTAG GAACCGCTTT AGGCCTCATT 
TTTTTGCTTT ATCCGATTAA AAAAGGATTG CATCGGAAAC AAAAGGGAGT TCCTTGGTAT 
GATGTCGTGC TTGCTTTCAC AGCGCTCGGG GTTGGCTATT ATAATGTGAT TAATTACGAG 
GAGCTTGTAG CGCAAAAAAT CGTGTTTGGG TATTCGCAAA TGGATATTAT TGTTGCTTCC 
CTTGGTGTGC TGTTAGTGCT TGAAGCGGCA AGAAGATGCG TAGGTTTGCC AATCGTGGCA 
GTAGCGGGTG TAGCAATTTT ATACGCGTTA TACGGAAATC ATATTCCAAC GAAAATGTTT 
GCCCATCGTG GATTTTCATG GGAAAAGTTA GCAACTGATT TGTATTTAAC GACAAAAGGA 
ATATTTAGTA CGCCAATTCA AGTGTCATCC ACATTTATCT TCTTGTTTTT ATTTTTCGGA 
GTGATGCTCA TTCGGACTGG AGTTGGTCAA TTTTTCAATG ACGTAGCGTT TGCGTTAACA 
GGAAGATTTA TTGGAGGACA GGCGAAAGCA GCAGTTGTTG CGAGCGCCTT GGAAGGAATG 
GTCTCGGGAA GCTCTGTCGC GAACACGGTA GGATCGGGAG CGTTTACGAT TCCAATGATG 
AAAAAGGCGG GTTATAAGCC GGAATTTGCC GCAGCTGTAG AAGCTTCCGC ATCAACCGGT 
GGGCAAATTA TGCCACCAGT AATGGGAGCG GCCGCATTTA TTATGGCTTC GTATACAAAC 
ACGCCGTATA GCCAAATCAT GTTGGCTGCG ATCATTCCTG CCATTTTATA CTTCCTCGGT 
GTATTTTTAG GCGTACACTT CGAATCGAAA AAACAGGGGA TTATCGGCAC ACCGAAATCG 
CAGCTGCCGA GCTTTCGGAA ACTGATGACA GAACGCGGAT ATTTGATTTT GCCGCTTATA 
GTCATTTTTT ACACATTACT GACTGGTAAA ACGCCGATGC GCGCTGCTTT AGTGGCGATT 
TTAGTCGCGT TTCTTGTCAG CTTAGTACGC AAAGAAACAA GAATGACACC ATGGCAAATT 
GTAAAAACGC TTGAGGAAGG TGCTCGAACC GCGCTTCCAG TCATCGCAGC ATGTGCAGCC 
GCGGGAATTA TTGTCGGTGT TGTCGTCCAA ACGGGATTAG GCGGAAGAAT AGCAAATGGC 
ATTATTACGT TAGGTGGAGG ATCATTAATT TTAACGTTAT TCTTTACGAT GATTGCCTGC 
CTTATTTTAG GAATGGGGTT GCCGACAACG GCAAACTATA TCGTAACCGC GACGATGGTT 
GCGCCAGCGT TAGTATTAGG GTTGGACGTT CCAGTTTTAG CTGCTCATAT GTTCGTCTTC 
TATTTCGGAA TTGTCGCTGA TATTACGCCG CCTGTCTGTT TGGCAGCATA TGCGGGTGCG 
GGACTGGCGG GAGCGAACCC GTTTATGACA GGAGTAAGGG CGTTTACGTT GGCGACGGCG 
GCGTATATCA TCCCATACGT ATTTGTTATG AACCCGCAAA TGATTTTAAT TGACGTTAAA 
CCGCTGTTTT TAACGATTTG CGTGGTCACG GCGATTATTG GCATGATCGG TGTAAGCAGC 
GCCATGGTTG GTTACCTTGT CAGAAAGGCG TATGTTTGGG AGCGGATTGT CTTATTTATC 
GCTGGTCTTC TTCTCATCTC GCCAAATATT ACGTTTAGTG TAATTGGAAG CGTGCTATTA 
ATTGCCGTTG CTGTGATTCA ATCAAGAAGA CCGAAAGAAA CAAATAACCT TTTCACCGCG 
ACCATGTAG 

 

Protein sequence

MKWRKKKDMK EKPLEELSQE EILEKYDRES SYRKNLGKWS WVVLFLGVSL TLFHLYTGYR 
GAFEARIQGP IHLGTALGLI FLLYPIKKGL HRKQKGVPWY DVVLAFTALG VGYYNVINYE 
ELVAQKIVFG YSQMDIIVAS LGVLLVLEAA RRCVGLPIVA VAGVAILYAL YGNHIPTKMF 
AHRGFSWEKL ATDLYLTTKG IFSTPIQVSS TFIFLFLFFG VMLIRTGVGQ FFNDVAFALT 
GRFIGGQAKA AVVASALEGM VSGSSVANTV GSGAFTIPMM KKAGYKPEFA AAVEASASTG 
GQIMPPVMGA AAFIMASYTN TPYSQIMLAA IIPAILYFLG VFLGVHFESK KQGIIGTPKS 
QLPSFRKLMT ERGYLILPLI VIFYTLLTGK TPMRAALVAI LVAFLVSLVR KETRMTPWQI 
VKTLEEGART ALPVIAACAA AGIIVGVVVQ TGLGGRIANG IITLGGGSLI LTLFFTMIAC 
LILGMGLPTT ANYIVTATMV APALVLGLDV PVLAAHMFVF YFGIVADITP PVCLAAYAGA 
GLAGANPFMT GVRAFTLATA AYIIPYVFVM NPQMILIDVK PLFLTICVVT AIIGMIGVSS 
AMVGYLVRKA YVWERIVLFI AGLLLISPNI TFSVIGSVLL IAVAVIQSRR PKETNNLFTA 
TM