Gene GWCH70_0154 details

Gene Information

• Locus tag: GWCH70_0154
• ID: 7977558
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacillus sp. WCH70
• Kingdom: Bacteria
• Replicon accession: NC_012793
• Strand: +
• Start bp: 172631
• End bp: 173182
• Gene Length: 552 bp
• Protein Length: 183 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 644797140
• Product: RNA polymerase sigma factor SigW
• Protein accession: YP_002948359
• Protein GI: 239825735
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02948] RNA polymerase sigma-W factor; [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00000564665
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAAAAC GTATAAAAGC GGTCAAAAAA GGCGATCAAA ATGCCTATGC TGATATTGTA 
GATCTTTATA AAGATAAAAT ATACCGTTTA TGTTATCGTA TGCTAGGAAA TCGCCATGAG 
GCGGAAGATG CTGCGCAAGA AGCGTTTATC CGCGCTTATG TTAATATTCA TACGTATAAT 
CCAAATATGA GGTTTTCCTC GTGGCTTTAC CGAATTGCCG CCAATTTGGC GATTGATAAG 
ATTCGGAAGA AAAAACCGGA TGCCTATTTA GACGAAGAGA TAAGCGGTAC TGATGGGCTT 
ACGATGTATT CACAGCTTTC CTCTAGCGAA GCTTCTCCGG AAGAAACATT AGAAAGTTTG 
GAGCTACAGG AAACAGTACA GAAAGCAATT GAACAACTTC CAGAAAAATA TCGTAGTGTT 
ATTGTATTGA AGTATATAGA AGGGCTATCA TTACAGGAGA TTAGCGAAAT TTTAGACTTG 
CCGCTCGGCA CGGTAAAAAC GAGACTTCAC CGTGGCAGAG AAGCGTTGCG AAAGCATTTG 
GGTCATTTAT GA 

 

Protein sequence

MKKRIKAVKK GDQNAYADIV DLYKDKIYRL CYRMLGNRHE AEDAAQEAFI RAYVNIHTYN 
PNMRFSSWLY RIAANLAIDK IRKKKPDAYL DEEISGTDGL TMYSQLSSSE ASPEETLESL 
ELQETVQKAI EQLPEKYRSV IVLKYIEGLS LQEISEILDL PLGTVKTRLH RGREALRKHL 
GHL