| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6380 |
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| Symbol | |
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| ID | 7975703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1126920 |
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| End bp | 1127645 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796947 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002948206 |
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| Protein GI | 239821021 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.505499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCCACG CCGCCCCCTC CCCACTTGCC GCACCGGCGA GCCCCGCACA GAGCTCCGAC
CGCGAGCTCG CGGCGCGCGC CGCGCAAGGC GATGCGCCGG CCTTCGAGTG CATCATGCGG
CGCCACAACC AGCTGCTGTT CCGCACGGCG CGCAGCATCC TCAAGAGCGA CGAGGAAACC
GAGGACGCGC TGCAGGACGC CTACCTGCGC GCCTGGCGCG CCATCGGCAG CTTCCGCGAC
GATGCGCAGC TCTCGACCTG GCTGGTCCGC ATCGTCATCA ACGAGGCCCT CGGGCGCCTG
CGGCGCCGCG GTGCGCAGGT GATTCCGCTC GACGGCGCCG CCGCGCCCGG CTTCGATGAA
GACGAGCCCG AATGGGCAGC CGCCGACGAT CCCGACAAAC AACCGGAACG CCACGCCATG
CGGGAAGAAC TTCGGCGGCT GATGGAGCGC CGCATCGATC GCCTGCCCGA TGCCTACCGC
ACCGTCTTCA TGCTGCGGGC GGTCGAGGAG ATGAGCGTCG AGGAAACGGC CGCGGCCCTG
GCGCTGCCCG AAGCCACCGT GCGCACCCGC TTCTTCCGCG CGCGCAGCCT TTTGCGCGAA
GGCCTGTCCC GCGACATCGA CGTGGCGGTG GGCGATGCAT TTTCATTCGA CGGCGCGCGC
TGCGATCGCA TCGTGGCACG AGTGCTGGCG AGCCTGGCCG ACGGGCGGGA ATCACCCCGC
CCCTGA
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| Protein sequence | MSHAAPSPLA APASPAQSSD RELAARAAQG DAPAFECIMR RHNQLLFRTA RSILKSDEET
EDALQDAYLR AWRAIGSFRD DAQLSTWLVR IVINEALGRL RRRGAQVIPL DGAAAPGFDE
DEPEWAAADD PDKQPERHAM REELRRLMER RIDRLPDAYR TVFMLRAVEE MSVEETAAAL
ALPEATVRTR FFRARSLLRE GLSRDIDVAV GDAFSFDGAR CDRIVARVLA SLADGRESPR
P
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