| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6370 |
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| Symbol | |
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| ID | 7975692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1118263 |
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| End bp | 1119021 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796937 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002948196 |
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| Protein GI | 239821011 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.357805 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAGCG TCTTTGAAAT CCTGCGCGAC AACTGGCTGC TGCTGCTCGT CGGCCAGTAC
CCCAGCGGGC CGCTCGGCGG CATCGTCGCC ACGCTGATCC TGTCGGTGCT GGGCATCGTG
CTGGCGTTTC CGCTGTCGGT GCTGCTGGCG CTCGCGCGGC TGTCGCCCTG GCGCCTTTTG
CGCTGGCCGG CCACGGTGCT GGTCTACGTG GTGCGCGGCG TGCCGCTGCT GATGGTGATC
CTGTGGGTCT ACTTCCTGGT GCCGATCCTG ATCGGGCGCG ATGTGTCGGG CTTCACCACC
ATGCTGTGCA CGCTGGTGAT CTACGAGGGC GCCTACCTGT CGGAGGTGGT GCGCGCCGGC
ATCCAGGCGC TGCCCAAGGG CCAGGCCGAG GCGGCGCGCG CGCTCGGCCA CAGCCACCTG
GGCACGATGT GGTTCGTGAT CCTGCCGCAG GCGCTCTACA ACATGCTGCC GAGCATGCTG
AGCCAGTTCA TCTCCACCAT CAAGGAGACC ACGCTGGGCT ACGTCATCAA CGTGCAGGAG
CTGACCTTCG CGGCCAACCA GATCAACAAC CAGCTGCTGA CCAAGCCGTT CCAGGTGTTC
TTCATCCTGG CGATGACGTA CTACGTCGTC TGCTTCAGCC TGACGCAGCT CGCGCAGTGG
CTGGAGCGGC GCATTGCCCA CAAGCGGCTC GGTGCAGCTT CCGTGAAGAC ATCCGAAGAC
GGTGTTTCGC TGCCGCCGCC GGTGGCAGCG AACCCGTGA
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| Protein sequence | MFSVFEILRD NWLLLLVGQY PSGPLGGIVA TLILSVLGIV LAFPLSVLLA LARLSPWRLL
RWPATVLVYV VRGVPLLMVI LWVYFLVPIL IGRDVSGFTT MLCTLVIYEG AYLSEVVRAG
IQALPKGQAE AARALGHSHL GTMWFVILPQ ALYNMLPSML SQFISTIKET TLGYVINVQE
LTFAANQINN QLLTKPFQVF FILAMTYYVV CFSLTQLAQW LERRIAHKRL GAASVKTSED
GVSLPPPVAA NP
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