| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6341 |
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| Symbol | |
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| ID | 7975663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1075190 |
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| End bp | 1076416 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796910 |
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| Product | transposase IS116/IS110/IS902 family protein |
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| Protein accession | YP_002948169 |
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| Protein GI | 239820984 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3547] Transposase and inactivated derivatives |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGTGC TTTATCCGCG CTGTGCGGGC CTGGACGTGC ACAAGGACAC CATCGTGGCC
TGCGTGCGAT GCGTCTCCCC GCCCATGCAT CAGGAGGTGC GCAGCTTCGG CACCACCACC
ACCGAATTGC TCGCGCTGGG CGATTGGCTG GCCGAGCACG ACTGCACCCA TGTGGCGATG
GAGGCCACCG GCGTGTACTG GAAGCCGGTG TGGCACGTGC TGGAGGCTGA GTTCGAGTTG
GTGCTGGCCA ACGCCGCGCA CATCCGCAAC GTGCCCGGCC GCAAGAGCGA CGTCAACGAC
GCGATGTGGA TTGCCGATCT CTTGGCGCAC GGCCTGATCC GCTCCAGCTT CGTGCCGCCG
CAGGCGATCC AGCAGCTGCG CGACCTCACG CGCACCCGCA AGCAACTCGT TCGGGAGCTC
TCCCAGCACT CGCTGCGCAT CCAGAAGGTG CTGGAGGACG CTAACCTCAA GCTGGGCAGT
GTGTTGTCGG ACGTGCTGGG CAAGAGCGGC CGCGCGATGC TCGATGCCAT CGTGGCCGGC
CAGAGCGATC CGGCGCAACT GGCTGCGCTG GCTCAGGGCA CGGCGCGCAA CAAGAGCGCC
GAATTGCGCG AGGCACTGCG CGGGCGCATC ACCGAGCACC ACCGGACCAT GCTGCGGCTG
CACCTGCAGG TGATCGACGC CTTGCACCAC ACGTTGGCCG AACTGGATGC GGCCGTGGGA
AAAGCGCTGG CGCCGATCCG GCAGCGCGCC CGCCTGCTCA CGACGATGCC CGGGGTCAGT
GACCTGACGG CCAGTGTCGT GGTGGCGGAG ATCGGCGTGG ACATGTCGCG CTTCCCCACT
GCCGGGCATC TGATCTCCTG GGCAGGCCTG TGCCCGCGCA GCGACGAGAG CGCCGGCAAG
CGCCGATCCA CCCGCGTTCG CAAGAGTGGC ACCTGGATCA AGACCACCCT GGTGACCGCC
GCCTGGGCCG CGGTGCGCGT CAAGTCCAGC TACCTGCGAG CGCAGTTCCT GCGTATCAAG
GCACGTCGCG GAGCCAAGAA GGCCATCCTC GCGGTGGCCG CCTCGATGCT CACCGCCGCG
TACCACATGC TTCGTGACGG CACCGAGTAC AACGACCTCG GCTGCGAGCA CTTCGACCGC
CAGGATCGCA CCAAAACCAT CCGTCGCCTC ATGAAACGAC TTCAAGATCT CGGCTGCGAG
GTCCCTGTAC TGGCTCATAC GGGGTAG
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| Protein sequence | MQVLYPRCAG LDVHKDTIVA CVRCVSPPMH QEVRSFGTTT TELLALGDWL AEHDCTHVAM
EATGVYWKPV WHVLEAEFEL VLANAAHIRN VPGRKSDVND AMWIADLLAH GLIRSSFVPP
QAIQQLRDLT RTRKQLVREL SQHSLRIQKV LEDANLKLGS VLSDVLGKSG RAMLDAIVAG
QSDPAQLAAL AQGTARNKSA ELREALRGRI TEHHRTMLRL HLQVIDALHH TLAELDAAVG
KALAPIRQRA RLLTTMPGVS DLTASVVVAE IGVDMSRFPT AGHLISWAGL CPRSDESAGK
RRSTRVRKSG TWIKTTLVTA AWAAVRVKSS YLRAQFLRIK ARRGAKKAIL AVAASMLTAA
YHMLRDGTEY NDLGCEHFDR QDRTKTIRRL MKRLQDLGCE VPVLAHTG
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