Gene Vapar_6339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_6339 
Symbol 
ID7975661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand+ 
Start bp1074060 
End bp1074797 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content67% 
IMG OID644796908 
Producthypothetical protein 
Protein accessionYP_002948167 
Protein GI239820982 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.889087 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTACGA TTGGAAAGAG CAAACTAAAC GCGCTCTATA CCCGCCTGGT CCCTGGAATT 
CCACTGACCT CAGAAGACTT GGCGGCCCTG GGGATCTCCG CGGACCTGGC CGTGCACTAT 
GTGCGCGCCG GCTGGCTCAC GCGTCTGGCA CGCGGCGTGT TCTGTCGTCC CAACGACACC 
CTGGCCCTGC ATCCGAGCCT CGTTCTGCTG CAGCGACAGC TGGCGGGCTT GCACGTGGGC 
GGCAAGTCGG CGCTGGACTG GTACGGCGTG CGCCAGTATG TGGCGCAGCA GCCAGTACTT 
CGGCTTTATG GTTGGGCGGC GGGGCACCTG CCGGACTGGT TCACTGGGCG CTTTCCGGCC 
GAGTACCACC GCAAGCGGCT GTTCGACGAG CAACCGGGCG CCTTGCTGCA CGCCGGCCCT 
TTCGAGAAGC GCGACGGGGC GGCGCAGGTG GCTGAACCGG AGCGCGCCTT GTTGGAGTTG 
CTGAGCGAGG TAGGCGTACG CCAGCCGCTG CAGGAAGCCC GCGAACTTGT GGAGAGCACC 
TACAGCCTGC GCGCCAACGT GCTGGGCGAG CTGCTGCGGC GGTGCACGAG CGTCAAGACG 
GTGCGGTTGT GCCTGCAGCT CGGCCGCGAG GCCTCTGTGC CCTGGGCGGC CAAGCTCGAT 
CCAGCCACGC TGCCAACGGG CAGCGACCGG CCCTGGGTGT CCCGTTCGGC CGACGGCCTG 
TTGGTGCTCA AGCCATGA
 
Protein sequence
MATIGKSKLN ALYTRLVPGI PLTSEDLAAL GISADLAVHY VRAGWLTRLA RGVFCRPNDT 
LALHPSLVLL QRQLAGLHVG GKSALDWYGV RQYVAQQPVL RLYGWAAGHL PDWFTGRFPA 
EYHRKRLFDE QPGALLHAGP FEKRDGAAQV AEPERALLEL LSEVGVRQPL QEARELVEST 
YSLRANVLGE LLRRCTSVKT VRLCLQLGRE ASVPWAAKLD PATLPTGSDR PWVSRSADGL 
LVLKP