| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6315 |
|---|
| Symbol | |
|---|
| ID | 7975637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1051983 |
|---|
| End bp | 1052900 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644796885 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_002948144 |
|---|
| Protein GI | 239820959 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.682713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGCAG CACAGGCGCC TTCGCCGAAC CGCAGCGGCA AGCAGGCGCA GTTGGCGGCG
CTCGCCGAGG CGCTGCGGCC CGAACTGCAC CGCTACTGCG CGCGCCTGAT GGGCTCGGTT
ATCGAAGGCG AGGACGTGGT GCAGGACACC TTCGAGCGCG CCTTCGCGGC CGTGCACGCC
ATGGACGAGG CGACGCCGCT TCGGCCCTGG CTGTTCCGCA TCGCCCACAA CCGCGCGCTC
GATCTGCTGC GCGGCCGGAC GATCCGCATG GCCGAGCCGA TCGACGCCGC CAACGACCTG
GCCGACACGG CCAACCCCGA CCCGATGGAG ATGCTGATGC GCCAGGAAGC TGTCAAGACC
GCGGTGTCGC GCTTCGCGGA ACTCCCGATC CACCAGCGCA GCGTGGTGAT CCTGAAGGAC
GTGCTCGGCG AATCGCTGGC GGAGATCGCC GCGGTGCTCG ATCTCTCGGT CGACGCCGTG
AAGGGCCACC TCGCGCGCGG GCGTGCGCGC CTGCGGGAGA TCAACGCACA GCCGCCGGGC
CCGCCCACAT CGCCGCCGCC GCCGTCCGCC GCGCTCGCGC GCTATGTCGC GCTCTTCAAC
CAGCGCGACT GGGACGGCCT GCGCGCGCTG CTGGCCGACG ACGTGCGGCT GGTCCAGTCG
GCGCATCCGG TGCGCGCCGG CCGCGCCGAC GTCGGCATGT TCTTCACGCT CTACGCAAAG
GTCGATGGCG TATGGCTTGC CCCGGCATGG CTCGAGGGCC GCGAGGTGAT CGCGGTGTTC
GACCGGCGCG GCGATCCGGA ACCGGGCTAC ATCATGTGGC TCGAGTGGCA GGGCGGCCGC
ATCAGCCTGA TCCGCGACTA CCGCCACATC CGCTACGTCA CGGCCGATGC ACCGCTGCAG
CTGATGGCTT GCGCCTGA
|
|---|
| Protein sequence | MSAAQAPSPN RSGKQAQLAA LAEALRPELH RYCARLMGSV IEGEDVVQDT FERAFAAVHA
MDEATPLRPW LFRIAHNRAL DLLRGRTIRM AEPIDAANDL ADTANPDPME MLMRQEAVKT
AVSRFAELPI HQRSVVILKD VLGESLAEIA AVLDLSVDAV KGHLARGRAR LREINAQPPG
PPTSPPPPSA ALARYVALFN QRDWDGLRAL LADDVRLVQS AHPVRAGRAD VGMFFTLYAK
VDGVWLAPAW LEGREVIAVF DRRGDPEPGY IMWLEWQGGR ISLIRDYRHI RYVTADAPLQ
LMACA
|
|---|
| |