| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6301 |
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| Symbol | |
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| ID | 7975623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 1040342 |
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| End bp | 1041574 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796871 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_002948130 |
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| Protein GI | 239820945 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATTT TCTTTTCCCG CGCAACCGCC TTGGCGGTTG TGCTGCTGCC GTGCCTTGCG
ACGGCCGCGC CCCTGTCGCT CGACGCCGCG CTGGAGCTGG CCGCCCGGCG CTCCGAGACG
GCACGCGCCG CCCGCGCCGG GGTGCGGAGC GCCACCGAAG CGGCGCAGGC CGCGGCCCAG
CTTCCCGATC CCGTGCTGCG CGTGGGCATC GACAACCTGC CCGCGACCGG GCCGGACCGC
TTCCACACCG CGCGCGAACC GATGACGATG AAGCGCATCG GCATCAGCCA GGAATGGCTG
TCCGCCGACA AGCGCGCGGC GCGCCAGGCC GCTGCCGATG CGGCGGTCGG ACGCGAAAGA
GTGCAGGCGC AGGTGGCCGC GGCCGAGACC CGCCTGCAGA CCGCGCTCGC ATACCTGGAC
GCCTTCTACG CCGGCGAAAG CCTGAAGCTC GCCGTGCTGG CGGAACACCA CGCGCATGAA
GAGCTGGAGG CTTCGCGTGC GCGCCTGTCG TCGGCCGCCG GCAGCAACCA GGAGGCGCTG
GCGATGGCAG GAGCAAGAGG CGTCTCGGAA GACGAGGCGG CGGACATCCG GCAGCAGCAG
AACGCCGCGC GCGTGGCGCT CGAACGCTGG GTGGGCGTGC AACCCGGCGA GCTGACGCCC
GTCGGCGAGC TTCCCTTGCC CGCTGAAGAC GCCTATGTGG CCGGGCACGC CACGGTGGCC
GCGCGGCAGC GCGACGTCGA CGTGGCCCGG CAGGCGGCGG CGGTCACGGC GTCCGACCGC
AAGCCCAACT GGACCTGGGA GCTGGCCTAC GGCCAGCGCA CCGGCTATTC CGACATGGTG
TCGGTCGGCG TGAGCATTCC GCTGCCGGTG GCACCCGGCG AACGGCAGGA CCGCGACACC
GCCGCCAGGC TGGCGCTGGT CGAAAAGGCC GAAGCCGATC TGGCCGAGGC CACCCGCGCC
GCCGGTGCCG AATACCGCGC ACTCGCGAGC GATGCCGAGC GCCTGCGGCA GCGCATCGAG
CGCTATCGCG CCGGTGTCGT CGTTCCCGCC GGCCAGAGGA CGGCCGCCGC GATGGCGGCC
TACCGCTCCA ACCAGGCGAG CCTCGCTGCG CTGTTCGAGG CGCGGCATGC CGAGCTCGAA
GCGCAGCGCA AGCTGCTGGC GCTGCAGCGC GATCTCACGC GGGCCCGAAT CCTACTGGCC
TTCCGGCCGC TCACTGCAGA GGTGGCGCGA TGA
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| Protein sequence | MSIFFSRATA LAVVLLPCLA TAAPLSLDAA LELAARRSET ARAARAGVRS ATEAAQAAAQ
LPDPVLRVGI DNLPATGPDR FHTAREPMTM KRIGISQEWL SADKRAARQA AADAAVGRER
VQAQVAAAET RLQTALAYLD AFYAGESLKL AVLAEHHAHE ELEASRARLS SAAGSNQEAL
AMAGARGVSE DEAADIRQQQ NAARVALERW VGVQPGELTP VGELPLPAED AYVAGHATVA
ARQRDVDVAR QAAAVTASDR KPNWTWELAY GQRTGYSDMV SVGVSIPLPV APGERQDRDT
AARLALVEKA EADLAEATRA AGAEYRALAS DAERLRQRIE RYRAGVVVPA GQRTAAAMAA
YRSNQASLAA LFEARHAELE AQRKLLALQR DLTRARILLA FRPLTAEVAR
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