| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6289 |
|---|
| Symbol | |
|---|
| ID | 7975505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 1027506 |
|---|
| End bp | 1028897 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796859 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_002948118 |
|---|
| Protein GI | 239820933 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0135333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAC CTGAGCCCAG GCTGCAGCGC AAGCTGCTGG CCTGGCTGCT CGGTCCGCTG
GCCGTGCTGT TGGTGCTGGA CACCGGCGCC GCCTACTGGA ACTCGCTGCG CTTTTCCAAC
CTCGCCTACG ACCGCGCGCT GTACGAGATC GGGCGCGAGA TCGTGCTGCA CGTGAAGCTC
GACGGCCTGC AGCCGCGGCT CGACCTGTCC GAGGCCGCGG GCAACATCCT GCTGCTCGAC
CAGGACGACC TGCTCTTCTA CCGCGTGGCC AGCGAGGACG GCAAGGCACT GGGCGGCGAT
GAAGAAATGC CGCCGCCGCG CCCCGGCGAC CCCGCCAGGC CGCGCTTCTA CCGCGACACG
GTGCGGGGCG AGCCGGTGCG GATGCTGGTG GCCTCGATGC CCATCGGCGG CAACCCCGAG
GCGCCGATGG TGCAGGTGCA GGTGGCCGAA ACGCTGCACA AGCGCACCCA TCTTGCGTGG
GAGATGCTGG CCAACGTGGT GGTGCCGCAG CTGCTGCTGA TCGTGATGGC CACGGCGGTG
GTCTGGTTCG GCATCTCGCG CGGGCTCGAG CCGCTGCAGC GGCTGCGCCG CGCGGTGTCG
GACCGCTCGC ACCTGGACCT GAGCCCGATC GACATCCACG ACGTGCCGGG CGAGGTGCGG
CCGCTGGTGG ACGAGGTCAA CGAGCTGATG GCGCGGCTCG GCCGCACCTT CGATTTCCAG
AACCGCTTCG TGGCCGACGC CGCGCACCAG CTGAAGACGC CCGTGAGCGG CCTGAAGGCG
CAGATCGAAC TGGCGCTGCG GGAGAGCGAC CCCGAGCGCG TGCGCCATTC GCTCGCGCAG
CTCTACATCA GCGCCGACCG GCTCTCGCGG CTGGTGCGCC AGCTGCTTTC GCTCGCGCGC
AACGAGCCCG GCGCGCTCGA CGCCATGCAG CTGCAGCCGC TCGATTTAAA CGCCTACGCG
CTGGAGGTCA GCATGGACTG GGTGCCGCAG GCGCTCAAGC GCGACATCGA CCTGGGCTTC
GAAGGCGCCG AGCATCCGCT GGTGATCAAC GCCGACCGCG ACCGGCTGCG CGAGCTCATC
AACAACCTGA TCGACAACGC GGTGCGCTAC AGCCAGGCGG GCGGCCGCGT GACCGTGCAG
GTGGGCCAGA GCGACAGCGA CCAGTGCCGC CTGGCCATCA GCGACGACGG TCCCAGCGTG
CCGGTGGAGG AGCGCGCGCG CATCTTCGAG CGCTTCCATC GCCTGCTCGG CACGCAGGAG
GACGGCAGCG GCCTGGGCCT GGCGATCGTC AGCGAGATCG CCACGCTGCA CGGCGCGCGC
ATCACGCTGG AGGAAGACAT CGACGGCGTG GGCAACACCT TCAGCGTCTT CTTCCCGCTG
CGCAAGGCCT GA
|
|---|
| Protein sequence | MRKPEPRLQR KLLAWLLGPL AVLLVLDTGA AYWNSLRFSN LAYDRALYEI GREIVLHVKL
DGLQPRLDLS EAAGNILLLD QDDLLFYRVA SEDGKALGGD EEMPPPRPGD PARPRFYRDT
VRGEPVRMLV ASMPIGGNPE APMVQVQVAE TLHKRTHLAW EMLANVVVPQ LLLIVMATAV
VWFGISRGLE PLQRLRRAVS DRSHLDLSPI DIHDVPGEVR PLVDEVNELM ARLGRTFDFQ
NRFVADAAHQ LKTPVSGLKA QIELALRESD PERVRHSLAQ LYISADRLSR LVRQLLSLAR
NEPGALDAMQ LQPLDLNAYA LEVSMDWVPQ ALKRDIDLGF EGAEHPLVIN ADRDRLRELI
NNLIDNAVRY SQAGGRVTVQ VGQSDSDQCR LAISDDGPSV PVEERARIFE RFHRLLGTQE
DGSGLGLAIV SEIATLHGAR ITLEEDIDGV GNTFSVFFPL RKA
|
|---|
| |