| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6265 |
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| Symbol | |
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| ID | 7975481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 1003635 |
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| End bp | 1004966 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796835 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002948094 |
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| Protein GI | 239820909 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCATT TTTCTCTTCC CGCGGCCTGG CCAGGCCTTT GCAGCGCCCG ACGAAGCGCG
GCAGCGCTGG CCCTGGCCGG CACCGTGCTC GCATTGATCG GCGCGCCTGC CATGGCGCAG
CAGCAGCAGA CGCTCACGAT GTGGAGCCAC TGGCCCGACG AGGTTTCGAA GCGCAGCTTC
ATCGAAGAGC GGGTGAAGCA GTTCGAGGCG GCTACGCCGC AGTGCAAGGT CAATCTGCAG
TTCGTTCAGA AGGCGGACCT CTACACGTCC GTGAAAACCT CCGTGCGCAC CGGCCAGGCA
CCGGACATCT TCTGGCTGGA GCCCGACGAG ATCGCATTCG CCAAGAGCGG CTACCTCGAG
CCGCTCGACA AGTACATCGA CCTGGCCAAC CTCGAGGACT GGGCCAAGCG CGCATGGACC
TGGAACGGCA AGGTCTACGC CATGCCGCAG GAGGCCTACT CGGTCGAGCT TTACTACAAC
CGCGACCTGA TGAAGAAGAT CGGCGTGACG CCGCCGGCCG GCATGCAGAT GACGCAGGCC
CAGTTCGCCG ACATGGTCAA GCGCTCGGTC GCCGCCGGCA TCACGCCGAC AGCCACGGGC
GTGGGCGACC GGCCCTACCC GGGTGCCTAC TTCCTGCAGG AGATCCTGTT GCGCAAGCTG
GGCACCGAAG ACTACGAGAA GCTCCTGACC GGCAAGCTGC CGTTCCAGGA CCCGCGCGTG
ATCGAGGCCA TGACCTGGGT CAAGCAGCTG GTCGATGCCG GCATGTTCCC CAGGAGCATG
GCCACGATGA AGCTGGGCGA GTCGCACTAC TACTTCCACA CCAACCCGGG CGCGCTGATG
TTCCCGATCG CAAGCTGGTA CACCGGGCGC GCCTTCGTGG CACCGGAGAA GGGCGGGCAG
CCCAAGGACT TTGCGCTCGG CCTGATGAAG TACCCGGCGA TGGACGGCAG CAAGTGCCCC
GAATGCAAGA CGCTGGCGGT CGGCGGCAGC TACGTGATGT ATTCGCGAAG CAAGAACAAG
GAATGCGCGG GCAAGATGCT CTCGTCGCTC GCCACCGTGG AGAACGGCAA CAAGTGGATG
GAGAGCGTGC TGCTGCAGAC GGGCGTCAGG ACCGACCCGT CCCGCATCAC CAGCATCTAT
GCACCGTACT TCAAGGAACT GCAGGAGCGC GGGGCCGGCG CCAGGTACTT CATCGGGACG
CCGCTGCACT ACATGAGCGG CAAGTGCGGC GACACCTTCG CGCAGGTGCT CAACCGGGCC
TTCCCCGGTG GCCTGGTGAG CGTGAACGAC GCCGCCGCGC AGATGGATGC GGCATGCAAG
GCCTCGGGCT GA
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| Protein sequence | MTHFSLPAAW PGLCSARRSA AALALAGTVL ALIGAPAMAQ QQQTLTMWSH WPDEVSKRSF
IEERVKQFEA ATPQCKVNLQ FVQKADLYTS VKTSVRTGQA PDIFWLEPDE IAFAKSGYLE
PLDKYIDLAN LEDWAKRAWT WNGKVYAMPQ EAYSVELYYN RDLMKKIGVT PPAGMQMTQA
QFADMVKRSV AAGITPTATG VGDRPYPGAY FLQEILLRKL GTEDYEKLLT GKLPFQDPRV
IEAMTWVKQL VDAGMFPRSM ATMKLGESHY YFHTNPGALM FPIASWYTGR AFVAPEKGGQ
PKDFALGLMK YPAMDGSKCP ECKTLAVGGS YVMYSRSKNK ECAGKMLSSL ATVENGNKWM
ESVLLQTGVR TDPSRITSIY APYFKELQER GAGARYFIGT PLHYMSGKCG DTFAQVLNRA
FPGGLVSVND AAAQMDAACK ASG
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