| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6261 |
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| Symbol | |
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| ID | 7975477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 998986 |
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| End bp | 1000740 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796831 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002948090 |
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| Protein GI | 239820905 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACG AGAAATCTCC TTTCGAGCCC GACGATGCAG CCGACGGATC CGGCATGCGC
AAGGGCCTCA CCAGCTACGG CGACCAGGGC TTCTCGCTCT TCCTGCGCAA GGCCTTCATC
AAGGGCGCGG GCTTCACCGA CGCGGCGCTC GACCGTCCGG TGATCGGCAT CTCCAACACG
GGGAGCGCCT ACAACCCCTG CCATGGCAAC GCACCGCAGC TGGTTGAGGC CGTCAAGCGC
GGCGTGATGC TGGCAGGGGG GCTGCCGATG GACTTCCCGA CGATCTCGAT CCACGAGAGC
TTTGCCGCGC CGACCAGCAT GTACCTGCGC AACCTCATGT CGATGGACAC CGAGGAGATG
GTGCGCGCCC AGCCCATGGA CGCCGTGGTG CTGATCGGCG GCTGCGACAA GACCGTGCCG
GCCCAGCTGA TGGGCGCGGC TTCGGCCGGC ATTGCCTCGA TCCAGCTGAT CACGGGCTCG
ATGCTCACGG GCGGCCATCG CGGCGAACGG GTTGGCGCCT GCACCGACTG CCGGCGCTAT
TGGGGCAAGT ACCGCGCCGG CGAGATCGAT GCGGAGGAAA TCGCCGACGT GAACAACCAG
CTGGTCGCGA GCGTGGGCAC CTGCTCGGTG ATGGGAACGG CCAGCACCAT GGCGTGCATT
GCCGAGGCGC TGGGCATGAC CGTGCCGGGC GGTGCATCGC CGCCCGCCGT GACGGCGGAC
CGCATCCGCA TCGCCGAGCA GACCGGCGCC CAGGCGGTAC AGATGGCGCG CACCGGCCTG
ACGATCGACA AGGTGTTGAC GCCCGAGGCC TTCGAGAACG CGATGCGGGT GCTGTTGGCG
ATCGGGGGCT CGACCAACGG CATCGTGCAC CTCGCGGCGA TCGCCGGGCG CATGGGGCTG
GAGATCGATC TGGCCGCGCT CGACCGCATG GGGCGGGAAA CGCCGGTGCT GCTCGACCTG
AAGCCATCGG GCCAGTGGTA CATGGAGGAT TTCCATCATG CGGGCGGGAT GGCGACCCTG
CTGCGCGAAC TGAAGCCGCT GCTGCACCTT GGCGCCATGA CCGTCAGCGG CCGCACGCTC
GGCGAGGAGA TGGAGCGGGC GGGCCCGGGC TTTCAGCAGA CGGTGGTGCG GTCGATCGGC
AACCCGATCT ATCCCCAAGG CGGCATTGCC GTGCTGCGAG GCAATCTCGC CCCGGGCGGC
GCCATCATCA AGCAGTCCGC CGCGGACCCG AAGCTCATGG AACACGAAGG ACGGGTCGTG
GTGTTCGAGA ACATCGAGGA CCTGGTCCAC CGCATCGACA GCGAGGAGCT CGATGTCACG
GCGCAGGACG TGCTCGTGCT CAAGAACATC GGCCCCAAGG GCGCGCCGGG CATGCCCGAG
GCCGGCTACA TTCCGATCCC GCGCAAGCTG GCCCGCGCCG GCGTCAAGGA CATCGTGCGG
ATCTCCGACG GCCGCATGAG CGGTACGGCG TTCGGCACCA TCGTGCTTCA TGTCACGCCC
GAATCCGCGG CCGGCGGTCC ACTGGCCCAT GTCCGCAATG GCGACCGCAT CCGCTTGAGC
GTCGAGCGCC GCGAGATCGC ATTGCTGGTC TCCGCGGAAG AACTCGCCCG GCGCGCGCAG
GAGTCCCCGG TCGCCGTACC GACCGCCGAG CGCGGCTACC GCAAGCTGTT CCTGCAGACG
GTGACGCAGG CCGACCTGGG CGTGGACTTC GATTTTCTGC GAGCGGCCCG GATGGTCGGC
AAGGTGCCGC GCTAG
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| Protein sequence | MTDEKSPFEP DDAADGSGMR KGLTSYGDQG FSLFLRKAFI KGAGFTDAAL DRPVIGISNT
GSAYNPCHGN APQLVEAVKR GVMLAGGLPM DFPTISIHES FAAPTSMYLR NLMSMDTEEM
VRAQPMDAVV LIGGCDKTVP AQLMGAASAG IASIQLITGS MLTGGHRGER VGACTDCRRY
WGKYRAGEID AEEIADVNNQ LVASVGTCSV MGTASTMACI AEALGMTVPG GASPPAVTAD
RIRIAEQTGA QAVQMARTGL TIDKVLTPEA FENAMRVLLA IGGSTNGIVH LAAIAGRMGL
EIDLAALDRM GRETPVLLDL KPSGQWYMED FHHAGGMATL LRELKPLLHL GAMTVSGRTL
GEEMERAGPG FQQTVVRSIG NPIYPQGGIA VLRGNLAPGG AIIKQSAADP KLMEHEGRVV
VFENIEDLVH RIDSEELDVT AQDVLVLKNI GPKGAPGMPE AGYIPIPRKL ARAGVKDIVR
ISDGRMSGTA FGTIVLHVTP ESAAGGPLAH VRNGDRIRLS VERREIALLV SAEELARRAQ
ESPVAVPTAE RGYRKLFLQT VTQADLGVDF DFLRAARMVG KVPR
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