| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6242 |
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| Symbol | |
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| ID | 7975458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 978465 |
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| End bp | 980258 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796812 |
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| Product | PQQ-dependent dehydrogenase, methanol/ethanol family |
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| Protein accession | YP_002948071 |
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| Protein GI | 239820886 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATTGA AGCTCTTGAA CGCGCTCATG GCCATCGGCC TGGCCGCGGC CGGCGGCGCC
GGCGCGCAAG TCACGGACAA GATGATCCAG TCCGAAGCCA CGGCGAACGG CAACGTCCTG
ACCTGGGGGG TCAATACCCA GGGCCAGCGC TACTCGCCGC TGAAGCAGGT CAACACCGGC
ACCGTGTCCC GGCTCGCGCC GGCATGGGCC TTCTCCTTCG GCGGGGAGAA GCAGCGCGGC
CAGGAGGCGC AGCCCGTGAT CCACAAGGGC AAGATGTTCG TGACCGCCTC GTACTCGCGC
ATCTACGCGC TCGACGCCAC CACCGGCAAG AAGCTGTGGA AGTACGAGCA CCGCCTGCCC
GAGGGCATCA TGCCCTGCTG CGACGTGGTC AACCGCGGCG CGGCGCTGTA CGACAACCTG
GTGATCTTCG CCACGCTCGA CGCGCAGCTG GTGGCGCTCG ACCAGAACAC CGGCGACGTG
GTCTGGAAGG AGAAGATCGA CGACTACGCG GCCGGCTACT CGGCCACCGC GGCGCCGATC
ATCGCCAACG GCCTGATCCT CACGGGCGTG TCGGGCGGCG AGTTCGGCAT CGTCGGCCGC
GTCGAGGCAC GCGACGCCAG GACGGGCAGC ATGGTGTGGT CGCGCCCCAC GGTGGAAGGC
CACATGGGCT ACACCTACGA CAACGACGGC AACAAGAAGG AGGCGGGCGT CTCGGGCACC
GTCAACAAGA GCTGGCCGGG CGACCTCTGG AAGACCGGCG GCGCCGCCAC CTGGCTGGGC
GGCACCTTCG ATCCCAAGAC CGGGCTGGCC TACTTCGGCA CCGGCAACCC GGCGCCGTGG
AACAGCCACC TGCGCAAGGG CGACAACCTG TTCTCGTGCT CGACCGTGGC CATCGACGTG
AAGACCGGCC AGATCAAGTG GCACTACCAG AACACGCCCA GCGACAGCTG GGACTTCGAC
GGCGTGAATG AGTTCGTCAC CTTCGACATG GACGGCCGGC GCGTGGGCGG CAAGGCCGAC
CGCAACGGCT ACTTCTACGT GAACGACGCC ACCACCGGCC AGTTGCTCAA CGCCTTCCCC
TTCGTGAGGA AGACGACCTG GGCCAACGGC ATCGACCTGA AGACCGGCCG CCCGAACTAC
GTGGCCGAGA ACCGCCCGGG CGATCCCGTT GCAGGCGGCG ACGGCAAGAA GGGCAGCTCG
GTCTTCGCGG CGCCTGGCTT CCTGGGCGGC AAGAACCAGA TGCCGATGGC CTACAGCCCC
GACACCAAGA TGTTCTACGT GCCCGCCAAC GAATGGGGCA TGGACATCTG GAACGAACCG
GTGGCCTACA AGAAGGGCGC GGCCTACCTC GGCTCCGGCT TCACCATCAG GCCGCTCAAC
GAGGACTACA TCGGCGCGCT GCGCGCGATC GATCCCAAGA GCGGCAAGAT CGCATGGGAG
ATCAAGAACG GTGCGCCGCT GTGGGGCGGC GTGCTCACCA CCGGGGGCAA CCTGGTGTTC
TGGGGCACGC CCGAGGGCTA CCTGAAGGCG GCCGACGCCA AGACCGGCAA GGTGCTGTGG
GAGTTCCAGA CCGGCTCGGG CGTGGTCGCG CCGCCGGTCA CCTGGCAGCA GGGCGGCGAG
CAGTACGTGG CCGTGGTTTC GGGCTGGGGC GGCGCGGTGC CGCTGTGGGG CGGCGAGGTC
GCCAAGAAGG TCAACCTGCT GGAGCAGGGC GGCATGGTCT GGGTCTTCAA GATCCCTTCC
GCCGGCGGCG CGCGCACCGC CCGCGCGGGC GAGGCCCGCG TGGCGTCCAA CTGA
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| Protein sequence | MQLKLLNALM AIGLAAAGGA GAQVTDKMIQ SEATANGNVL TWGVNTQGQR YSPLKQVNTG
TVSRLAPAWA FSFGGEKQRG QEAQPVIHKG KMFVTASYSR IYALDATTGK KLWKYEHRLP
EGIMPCCDVV NRGAALYDNL VIFATLDAQL VALDQNTGDV VWKEKIDDYA AGYSATAAPI
IANGLILTGV SGGEFGIVGR VEARDARTGS MVWSRPTVEG HMGYTYDNDG NKKEAGVSGT
VNKSWPGDLW KTGGAATWLG GTFDPKTGLA YFGTGNPAPW NSHLRKGDNL FSCSTVAIDV
KTGQIKWHYQ NTPSDSWDFD GVNEFVTFDM DGRRVGGKAD RNGYFYVNDA TTGQLLNAFP
FVRKTTWANG IDLKTGRPNY VAENRPGDPV AGGDGKKGSS VFAAPGFLGG KNQMPMAYSP
DTKMFYVPAN EWGMDIWNEP VAYKKGAAYL GSGFTIRPLN EDYIGALRAI DPKSGKIAWE
IKNGAPLWGG VLTTGGNLVF WGTPEGYLKA ADAKTGKVLW EFQTGSGVVA PPVTWQQGGE
QYVAVVSGWG GAVPLWGGEV AKKVNLLEQG GMVWVFKIPS AGGARTARAG EARVASN
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