| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6231 |
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| Symbol | |
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| ID | 7975447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 962292 |
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| End bp | 966119 |
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| Gene Length | 3828 bp |
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| Protein Length | 1275 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796801 |
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| Product | PBS lyase HEAT domain protein repeat-containing protein |
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| Protein accession | YP_002948060 |
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| Protein GI | 239820875 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATTTC TGGACAGGAT CTTGGGCGCC GTCACGGGCA GCGCCGGCAC CGCAGCCGCC
AACGGCTTGA CGCGCGAGCA GGCGCAGCTG TTGAAGCAGG CCTTCGAGCC GCTCGAAAGA
GCAGGCAAGG AGCTGCCCCA AAAGGGCGCC GCGTTCCTGG TCGACGGCAC GCAGGAAACC
GTGCTGCTCG ACCTGCAGGC TGCCAAGTCC TTCGAGCCAG GTCAGTTGCT CGGAGCCCCC
GGCCGCCTGC GTTGGGGTTA CAGCAACCAC CAGAACAAGG CGCTGGAGAA GATCGGCAAC
CAGAGCCTCG AGCAGCGTGG CCGCTTCTAC GCCAGCGTGG ATGCCAGTGC TCCTGCGCTC
GACGTGCTGG TGCGACTGGG CAAGCTGCTT GCGGCGGCCG ACGGCGGACA GTCGCTCGAG
CATCCCGGCG CGCCGGTGCC CGACTGGCTT CAGTACCTCA TCAACGACGC GGTGTTCGCG
AGCTTCAACA AGAGCAGCTC CAGCAACGCT GCCGAGCGCG ATCTCGCCAA GCACCGGCCC
GCGTGGAACG TGCATCTCAT TGCAGCCTTG CTCGCGCACG AAGGACTCGA TCCGCATATC
GCCCTGCAAG AGGTCTTCGA GCGCAAGGGA CTGGACAGCT GGTACCACGA CCGGCTCGAC
GGGCTGGTCG AGGCCCCTGC CGTTGCCGAC TACATGCGCA GCCAGCGCGA CGCCACCGAG
GCGTTGCCCG CAAAGCTGTC GGCCGCGGGC CGCGTTCTGC TGGCCAGGCG CATCGGCAAG
GACAAGGCGC TTTTGAACGA CTTTGCGCCG CTGTTCCTGC GCCTGGCCAT CGACGGCAGC
AAGACAGTGC GCGCCGAGGC GACGCCGCAC CTCGAGGGCA TTGCCGAGGC GCAGCGGCTC
GAACTCCTGG GGCAACTGCT CAAAGACGGC GACACCACCC AGCGCACGCA GGCCGCCGAA
CTGCTTGCGC GCCTGCCGGG TGGCGCCGCG CGCGCGCTGC TCGACGTGGC GGCCGGCACC
GAGACCAGCA AGGCCGTGCA GCAGGCCATC CGCTCGGCCA TGTCGCGGCT CGACGCCGCG
GGCGACGCGG GCGAGCTCGA ATTGCCCGAG CCGCCGGCCT GGCAACCCTT CGAGGACATT
CCGCTGGGTG AAGAGGCGGT GCAGTTGCTC ATTGCCAACC GCATCGAGCT GCTCGAGAAG
AACCGCGTCG CGGCCGAGGC CGAGATCGAG GAGAACAAGG CCTCCAAGCA GACCTACAGG
TACAAGTGGC GCCAGGACAA CTACGCCGCC CACAAGAAGC TCACCGACGA GGACATGCGC
GTGGCCGTGC GCGTGCTCAA CGGGCAGGGC AGCAAGAACG ACCAGAACCG CGCGAAGAAC
GGCCAGCTGC AGCAGGTCGT GGGTTTCGGC AATCGCCTGC AGTCGATGCC GGGGTTCGGC
ATGCCGCACC TGATCCGCTG GCTGGCCGTG TCGCGCCACT GGACCAGCTT CTGGTTCGAC
GACGGCTTTC ACAAGTGGCT CGGCCGCCAG CCCGTGGGCT CGGTCGACCT GCGCGCGCTG
GCCGAGCTGC TCAAGCGCTC CGGCATGCCG ATCGACGATG TGGCGCACAC CGCGCTCTTT
CCATACTGGA ACCAGGCCTC GGCGGTGGAC GTGCTGCCGG CCGACCGCGT GTGGCCCTTC
TTCGCGGAGC ACCCGGAGTA CATCGACGAA GGCCTGGGCC TTGTCGCGCC GCCAAAGCGC
GAAGGCCGCC AGACCCAGCT CGACCTGAAC GCCACGCTGC GCACGCTGGC GGTCTTTCCG
ACCGTGCAGG CACGTTGGCT GCCGCGGGTG ATGGAATTGG CCCTCGGCGA AGGCAAGACG
CACCGCGCAG CCGCGCAGAA GGCACTGTCG ATGCTGCCCG ACATCGGCCG GCGCGTGGTC
GAGTCGCTCG GCGCCACCAA GAGCGAGGTG CGCATCGAGG CCGCCAACTG GCTGGCCGAG
CTCAAGTACG CCGAGGCCGT GCCCGCCATC ACCAAGGCGC TCGAGAAGGA AGCCCGCGAG
ACCGTGCGCG CGGCCTGCCT CACGGCGCTC GAGGCGCTGG GCGACGACAT CTCCGCGCGT
CTGGCACCGG CGATTCTTCT GGCCGAGGCG AAGAAGGGCC TGAAGGCCAA GCCTCCGGCG
GGCCTTGCGT GGTTCTCCCT GGACGCGCTG CCCGCCTGCA AATGGCTGGA CGGCAGCCCG
GTAGAACCCG AGATCGTGCG CTGGTGGGTG GTGCTCGCCT GCAAGCTCAA GGAGCCGGGC
GGCAATGCGC TGCTCACGCG CTACCTTGGC CTGCTCGATG CCGCCAGCCG CCAGGCCGTC
GGCAGCCTGG TGCTGCGCCA GTTCATTGCA CACGACACGC GCCATCCCAC GCTCGACGAA
GGCATTGCGC ATGCCAACGC CCATGCACCG CAGCGCTACC AGGGCAACCA GCAGCGCTAC
CAGAACGCGA AGGCCGAGCA CAAGCAGTAC TACGAAGCCG ACTTCCAGAA GACGCAGGAG
CAGGTCTTCG AGGAGTGCAA GCGCGAGAAG ATGAGCGAAT ACCTCGGCAG CGCGATCGGC
GAAAAAGGCA CGCTTGCCCT GACCGCCCAT GCGCCGGGGC ACGAGGTCGT CACGCTGCTG
CAGCAGTACA TGCGCGACCA TTACCAGCGC CGCTCGCAGA TCGAAGCCAT GCTCGAAGGC
GTGGCACCGG GCAACGACCC GGTGGTGATC CAGTTGCTGC TGGGCATATC GCGCCGCTAC
CGCACCGCCT CGGTCCAGGA GAAGGCGCGC GCTCTGGTGC AGCAGATTGC CGACCGCAAC
GGCTGGACGC AGGACCAGCT CGCCGACCGC ACCATTCCCA CCGCGGGCCT GGACGACACC
GGCAAGCTCG AGCTCGCGTA CGGCGACCGC ATCTTCACCG TGGTGCTCGA CGCCGCGATG
AAGCCCGAAC TGCGCAACCC CGAAGGCAAG ATCGTCAAGG CCCTGCCCGA GCCGCGCCAG
AACGACGACC CCGTGCTCAT CAGGGATGCG AAGGCCCAGT TCTCGACCAG CAGGAAAGAG
CTCAAGCAGG TCATCGACCT GCAGACCGCG CGCCTGTTCG AAGCCATGTG CACCGGCCGC
ATCTGGCCGC AGGCCGAGTG GCGCGAATAC CTGCACCGGC ACCCGATTGC CGGGCGGCTG
ATACAGCGGC TCGTGTGGCT CGAACTGGAT GCGGAAGGCG CGGTGCGCGG CAGCTTCCGG
CCCACCGAGG ACGGCAGCCT GATCGACACG CAGGACGACG AGGTCGAGCT TGCGGCCGAC
AGCCAGTTGC GCCTGGGCCA CGCTTCGCTG GTCGACGAAG GCACAGCGGC CGCGTGGAAC
AGGCACTTCA AGGACTACAA GCTGGTGCCG CTCTTCGCGC AGATGACGCG CAAGCCGCCG
GCGGTCGCGT TCATCGACGA CAAGGGCCAG CCGGTGAGCG AAATCAACGA CCGGCTGGGC
TGGATCAGCG ACACCTTCAC GCTGCGCGGC AGCTTTGCCA AGCTCGGCTA CCAGCGCGCG
CAGGCCGAGG ACGGCGGCTT CTTCTACCAG TACACCAAGG AGTTCTCGTC GGCCGGCGTG
CGCGTGGCCA TCGAGTTCTC GGGCAACACC CTGCCGGAGG AGAACGTGCC CGCGGCGCTC
AAGACGCTGG GCTTCGAGGA CATGAAGACC CGCGGCTACA GCGACCGGGC GCTGCCGCTG
TCGAGCGTGC CGCCGGTGCT GCTGGCCGAG GCCTATGCCG ACTACCTGGC CATTGCCCAG
GCCTGCGCCG GGTTCGACGC GGGCTGGGAA AAGAAGATGC CGTGGTAA
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| Protein sequence | MGFLDRILGA VTGSAGTAAA NGLTREQAQL LKQAFEPLER AGKELPQKGA AFLVDGTQET
VLLDLQAAKS FEPGQLLGAP GRLRWGYSNH QNKALEKIGN QSLEQRGRFY ASVDASAPAL
DVLVRLGKLL AAADGGQSLE HPGAPVPDWL QYLINDAVFA SFNKSSSSNA AERDLAKHRP
AWNVHLIAAL LAHEGLDPHI ALQEVFERKG LDSWYHDRLD GLVEAPAVAD YMRSQRDATE
ALPAKLSAAG RVLLARRIGK DKALLNDFAP LFLRLAIDGS KTVRAEATPH LEGIAEAQRL
ELLGQLLKDG DTTQRTQAAE LLARLPGGAA RALLDVAAGT ETSKAVQQAI RSAMSRLDAA
GDAGELELPE PPAWQPFEDI PLGEEAVQLL IANRIELLEK NRVAAEAEIE ENKASKQTYR
YKWRQDNYAA HKKLTDEDMR VAVRVLNGQG SKNDQNRAKN GQLQQVVGFG NRLQSMPGFG
MPHLIRWLAV SRHWTSFWFD DGFHKWLGRQ PVGSVDLRAL AELLKRSGMP IDDVAHTALF
PYWNQASAVD VLPADRVWPF FAEHPEYIDE GLGLVAPPKR EGRQTQLDLN ATLRTLAVFP
TVQARWLPRV MELALGEGKT HRAAAQKALS MLPDIGRRVV ESLGATKSEV RIEAANWLAE
LKYAEAVPAI TKALEKEARE TVRAACLTAL EALGDDISAR LAPAILLAEA KKGLKAKPPA
GLAWFSLDAL PACKWLDGSP VEPEIVRWWV VLACKLKEPG GNALLTRYLG LLDAASRQAV
GSLVLRQFIA HDTRHPTLDE GIAHANAHAP QRYQGNQQRY QNAKAEHKQY YEADFQKTQE
QVFEECKREK MSEYLGSAIG EKGTLALTAH APGHEVVTLL QQYMRDHYQR RSQIEAMLEG
VAPGNDPVVI QLLLGISRRY RTASVQEKAR ALVQQIADRN GWTQDQLADR TIPTAGLDDT
GKLELAYGDR IFTVVLDAAM KPELRNPEGK IVKALPEPRQ NDDPVLIRDA KAQFSTSRKE
LKQVIDLQTA RLFEAMCTGR IWPQAEWREY LHRHPIAGRL IQRLVWLELD AEGAVRGSFR
PTEDGSLIDT QDDEVELAAD SQLRLGHASL VDEGTAAAWN RHFKDYKLVP LFAQMTRKPP
AVAFIDDKGQ PVSEINDRLG WISDTFTLRG SFAKLGYQRA QAEDGGFFYQ YTKEFSSAGV
RVAIEFSGNT LPEENVPAAL KTLGFEDMKT RGYSDRALPL SSVPPVLLAE AYADYLAIAQ
ACAGFDAGWE KKMPW
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