| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_6226 |
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| Symbol | |
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| ID | 7975442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 956452 |
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| End bp | 957006 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644796796 |
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| Product | carboxymuconolactone decarboxylase |
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| Protein accession | YP_002948055 |
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| Protein GI | 239820870 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2128] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.676342 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGTTC GTATCGCTCC TGCGGAGCCA CCTTTCCCCG CCGGCATCCA ATCTTCGCTT
GAAGGCCTCA TGCGTGGAAA ACCGCCTCTG GTGCTGTTTA CCACGCTCGC GAGGGACCCT
CGCCTTTTCC AGAAGTTTTT CGCGGGCGGG CTGCTTGACC GTGGAAACCT AACCTTGCGA
CAGCGCGAAC TCGTCATCAC GCGCACCACG GCGCTGTGTA AATCGGAGTA CGAATGGGGC
GTCCACATCG CACTGTTCGC ATCGCACGCC GGATTTGATG AAGCCCAAGT CCTTTCGCTC
GCCTCCGGAC AACCGCGAGA TACCTGCTGG CAAGATGAGG ACAGGCTGCT GTTAGAGCTT
TGCGACATGC TTCATTCCAA CTGCACTGTC GACGACGCCC TATGGCAGTC GCTTAAGACG
GCGTTCAGCG ACGAGGGCAT TCTCGAGCTG CTCATGCTGG CAGGCTTCTA TCGCACCGTC
AGCTATCTGG CAAACGCTCT GCGCTTGCCT GCCGAGCCAG GCTCGGCAAC CTTTCCCTCG
TCTTACCGCA GCTAA
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| Protein sequence | MTVRIAPAEP PFPAGIQSSL EGLMRGKPPL VLFTTLARDP RLFQKFFAGG LLDRGNLTLR
QRELVITRTT ALCKSEYEWG VHIALFASHA GFDEAQVLSL ASGQPRDTCW QDEDRLLLEL
CDMLHSNCTV DDALWQSLKT AFSDEGILEL LMLAGFYRTV SYLANALRLP AEPGSATFPS
SYRS
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